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Information for unigene UN09725

FASTA Sequence
Unigene ID: UN09725Length: 1350 SSR 
AGAATAACCCGACTCAATGTCAATTATAGCATTTTGACATAACATTACTTAAATGGACATAACCCTCTCACAGCTTTAAAAGACTC
CTACATAAAGTTACTCTTATCTTTCTTTCCACAGCCTGAAACAATAAAAGAGGGTGGTGCGACCAAAACAAAACAATCTTTTTTTT
GTGCCATGTGAATTTACTCTAATTTTTAATGGGGACTCAAGAGCATGATCATCCACTAACCATAGACCATAGTCACGGAAACGTTT
AGTCTTCTTTTCAAAACCAAGAATGTAGTTATTGTGGATTATCACATGTTTCCCTTTTGTCTCCTTAACCCATGTCTTGTTCTTGA
AGTACAATCCTCCTGTTGGGAATGCTGCCTGAGGAAGCAAGTAGAGATCCACCTGATGAGCTGTTTTCATAAGAGCCCAGTTAAAA
GCAGGCTGATCGTTAGCTTTCTTTTCTCTGGACCAAGGTTGGTCTCGCATTTCCTCAATCCATTTCTTCAGGAGAAGCTTAGCGCC
AGTAGTGGGGCGCAAGAAAATCATGCAGCTACAAATATAAGGCCTTCCTTTTTTACCAGGAGGTGGTAAATCATGAGAATGATCCA
AGGGCTTAATAGCAGTCATGTCATCCTCGAAGTAAGCATCATGTCTTCCTTCCAAATAGTTGAAGGGATCTTGGAGCCAGACCATA
TCAACATCGTTGTACATAACACTGTAACCTAGCTCCACTATTTGCAACAGATGCTGCGGCCTCCGCGATGTGAAATTGAAGAAACC
CTGGGGAACCGAATTTGTGAGCGGTCTGAGAATCGAGGGCGGGAGGGATGAGAACGGCGTGACCAGGCCATTTCTCGTTAACCTTG
TAGAGAGTAGCGTAATCCTCGGCGATGACGAGGACTTTGTCTTGATGATTCTGCCTGGAGACGCTGATCAGCCAGTTGTTGAGGAA
AGGCAAGTATGGATAGCTCACTGCGCAGACGATCACAGTGCCGTTCTTGGAGGAGAATGTGTTTGGAAAGGGAGATCCAGCCCAGG
GTAGGAACACGCCGAGGATGACGAGGAGTGCGAGGAGGAGGAGGAGGCCGTTGCGGCTGAGGAGGGAGATTGGGCGGTTAGAGAGT
GAAGAGTTTGAAAGAGGAGAATAAGAGAAAGGGTTTTTGATGGGGCGCTGGTGAAGGTACTGTTGCTGCGCCATCGGGAGAGAGAG
ATGTATTGGAATCGAGAGCTGAGTTGAATTCAATACACATACAGATTAGAGAATTTTTGGAGAGAGTTCAGATCTGATGATGAGAT
GGTGTGGAGTGAGTGAGATCTCAACACACATGAAGAAGAAGAAGAAGAAGAATGCCGATT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002872902 hypothetical protein ARALYDRAFT_912111 [Arabidopsis lyrata subsp. lyrata]9592e-101
NP_849279 rhamnogalacturonan II specific xylosyltransferase [Arabidopsis thaliana]9476e-100
AAZ94713 putative alpha 1,3-xylosyltransferase [Linum usitatissimum]9306e-098
XP_002511939 conserved hypothetical protein [Ricinus communis]9191e-096
NP_001055421 Os05g0386900 [Oryza sativa Japonica Group]9181e-096

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q9M146 At4g012209474e-100
Q0R3Z8 Putative alpha 1,3-xylosyltransferase9304e-098
B9RE00 Putative uncharacterized protein9197e-097
A2Y471 Putative uncharacterized protein9189e-097
Q60E68 Os05g0386900 protein9189e-097

Arabidopsis top hits (Blast detail)Scoree value
AT4G01220.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: RGXT1 (rhamnogalacturonan xylosyltransferase 1); UDP-xylosyltransferase (TAIR:AT4G01770.1); Has 188 Blast hits to 185 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 165; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).9472e-102
AT4G01770.1 RGXT1 (rhamnogalacturonan xylosyltransferase 1); UDP-xylosyltransferase8504e-091
AT4G01750.1 RGXT2 (rhamnogalacturonan xylosyltransferase 2); UDP-xylosyltransferase8423e-090
AT1G56550.1 UDP-xylosyltransferase8048e-086
AT4G01220.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: RGXT1 (rhamnogalacturonan xylosyltransferase 1); UDP-xylosyltransferase (TAIR:AT4G01770.1); Has 153 Blast hits to 150 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 142; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).6372e-066

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
101  25%
 
91  25%
 
122  50%

Unigene MembersMember information