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Information for unigene UN09814
| FASTA Sequence |
| Unigene ID: UN09814 | Length: 711 |
SSR | | GGATATCCAACCAAGAAAAAAGTATGAAGATCTCTTCTCAAACTCTAGTTTTCGTGACTATAGCACTTGTCCTAGCTTTTGCAGTT
CCTCTGAAAGCCCAAGACAGGCAACAAGATTACCTCGATGTGCACAACCGTGCTCGTGCCGCTGTTGGTGTGGCTCCGATAAGATG
GCATGCGGATGTGGCGGAATACGCCCGACGATATGCTCTGCAAAGGCGAGGGGACTGTCGTCTAACTCACTCAGGCGGGCGTTACG
GCGAAAACTTGGCAGGAAGCAGTCGTGATCTGTCTGGAGCTGACGCAGTGAGGTTGTGGGTCAACGAGAAGAACGACTACTTCTAC
AATTCGAACACTTGTCGTTCCGGAAAAGCATGTGGTCACTATACTCAAGTTGTGTGGAGAAGCTCGGTGTGGGTTGGATGTGCCAA
AGTCAGGTGTAATAGTGGTGGAACTTTCATCGTTTGCAGCTATGATCCTCCTGGTAATATTAGGGGCCGTAGGCCTTACTAAGAAT
ATATATATATGTACGCAAATAAATAAAACATGTCCATAGAGGACGTACGTGTGTGTGTTGTTTTTATCTTTCAAATAATGATTATC
ATCTACCACTACTAGGATATGGTGATTCGATAACGTTCGTGTGTATGGTTGCATAATATTTTGTGATGGGATAATACATTGATAAA
TAGTTGTTTGTACGTACAATTAC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_195097 putative pathogenesis-related protein [Arabidopsis thaliana] | 623 | 8e-063 |
| XP_002862299 hypothetical protein ARALYDRAFT_497527 [Arabidopsis lyrata subsp. lyrata] | 622 | 1e-062 |
| XP_002869195 hypothetical protein ARALYDRAFT_491309 [Arabidopsis lyrata subsp. lyrata] | 602 | 2e-060 |
| XP_002862297 hypothetical protein ARALYDRAFT_920939 [Arabidopsis lyrata subsp. lyrata] | 595 | 1e-059 |
| XP_002336902 predicted protein [Populus trichocarpa] | 544 | 1e-053 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
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| P33154 Pathogenesis-related protein 1 | 502 | 4e-050 |
| Q41359 Pathogenesis-related protein PR-1 type | 482 | 8e-048 |
| P09042 Pathogenesis-related protein 1C | 475 | 5e-047 |
| P08299 Pathogenesis-related protein 1A | 474 | 7e-047 |
| P07053 Pathogenesis-related protein 1B | 460 | 3e-045 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q39187 Pathogenesis-related protein 1 | 623 | 5e-063 |
| Q9XH05 T1N24.14 protein | 600 | 2e-060 |
| B9P7C7 Predicted protein | 544 | 8e-054 |
| B9HN43 Predicted protein | 543 | 1e-053 |
| A9PEI1 Predicted protein | 540 | 2e-053 |
| Arabidopsis top hits (Blast detail) | Score | e value |
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| AT4G33710.1 pathogenesis-related protein, putative | 624 | 3e-065 |
| AT5G26130.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: root, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related, conserved site (InterPro:IPR018244), Allergen V5/Tpx-1 related (InterPro:IPR001283), SCP-like extracellular (InterPro:IPR014044); BEST Arabidopsis thaliana protein match is: pathogenesis-related protein, putative (TAIR:AT4G33710.1); Has 2282 Blast hits to 2195 proteins in 288 species: Archae - 0; Bacteria - 49; Metazoa - 1341; Fungi - 231; Plants - 611; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). | 601 | 1e-062 |
| AT2G14580.1 ATPRB1 | 529 | 3e-054 |
| AT4G33720.1 pathogenesis-related protein, putative | 514 | 1e-052 |
| AT2G14610.1 PR1 (PATHOGENESIS-RELATED GENE 1) | 503 | 3e-051 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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