RadishBase

| | | |

Information for unigene UN09852

FASTA Sequence

Unigene ID: UN09852	Length: 1282	SSR
TTTTTCTTTCCTCCAAATATATTTAGATGGACACAAAACGCTGTGATACAAAGATAAACCAAATTGGACCATCTTTTTAAATGGAG AAAGGAACAGAGTTTGGGGCGCTTCATTTAAAACCGAATAACCGGTTAGAGTAACTTGAGTATTGTGCAAACACTAATCTTCTAAG ACAAGGCAATGTGCAGTCATTGTCCTCTACTTTGAAACTCGTCTTTTTTTTTCTTTTTCGGTTAGAAATCACAACTTTTAAGTCTG AGTCTTTGCTTCTTCTGCTCCGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTTTCCTTCTTCTTCCTCAGCCTCAAGAC CTAGAGACTCGATTAGGCACTCTTGAGCTTCCTCTAGTGCTGATTCATTTGCATCTGTTGCATATAATATCTTCTTAACCGCTACC ACTATCGGAAGATCATCGAGTTCAGGAGTCTGACAGAGTATCTCTATATCCCTGAGCTTAGAGAAGTAAAAATCCCTTTCCTTCTC CAAGAGATCCACCGAGACCTTGACATCTTCAAGCTCCTTCGACAGAGCTTGCACTTCGGCTGATGAGTTGCTCCCACCTCCAGTTG CTTGTGATCTTGCTTGCTTGGGACCAGTTGGTTTGCTGGAAGTAGTGACTGGAGGAGGAGGTTGATGCGTATTGTTTGTTTGCAGT GACTTTGAGACCTTACTGGTCCCCTTTACGCTTTTCTCTTTGCCACCTCTTGATCTTCTTTCTACTGGATTGTAATTCTCGTTCAT AATGCCGCCATTGATAGAATCACAAAAACGTTTCAGCCATTGCAGAAACTCCAAGTTGTCTAGTGGTCGACCTTTGACAAGCCTGT TGACTTCCAATGGCTTTGTGATTTTCAGTTTGGTGAAGACTTCTTGCATGACTTTGTAGTTTTGAATCATCTCGTACTCGTTCTTC GCCGCAAAATTAACCTTGTGCATAGGAACAACTCCAGGAAAGGTCATGTCCAACATTTGGCATTGAACAGCACCTGATGCAACCTC TTCGATGCGAGAGAGATTGAGATGAAGGCGGTCATTGATCCAACCGAGAATCTCGTTTCGTCCAACGAAGTAAGCACTGTCCATCA TCCCAATGTTCGTCGCCATCTTCTGATACGAACTAAAGAAAAGTTACCTCCTTTTTTTCTATTGGGAAAACTCAGATGCAAATGCG ATATGATGATCGAAAGGAAAAAAAAAGAGGTTAAAGAGAGAATCAAATGGGGGGTTAGGTGAAACGAAACGAAACTCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_201056 microtubule-associated protein, RP/EB family [Arabidopsis thaliana]	1354	4e-147
XP_002864798 ATEB1B [Arabidopsis lyrata subsp. lyrata]	1318	5e-143
ABK93021 unknown [Populus trichocarpa]	1016	6e-108
XP_002318604 predicted protein [Populus trichocarpa]	986	2e-104
XP_002330097 predicted protein [Populus trichocarpa]	984	3e-104

Swiss-Prot top hits (Blast detail)	Score	e value
Q9UPY8 Microtubule-associated protein RP/EB family member 3	470	5e-046
Q6PER3 Microtubule-associated protein RP/EB family member 3	469	6e-046
Q5XIT1 Microtubule-associated protein RP/EB family member 3	469	6e-046
Q8R001 Microtubule-associated protein RP/EB family member 2	445	4e-043
Q15691 Microtubule-associated protein RP/EB family member 1	444	5e-043

TrEMBL top hits (Blast detail)	Score	e value
Q9FJJ5 Microtubule-associated protein EB1-like protein	1354	2e-147
A9P9G8 Putative uncharacterized protein	1016	4e-108
B9I2Z5 Predicted protein	986	1e-104
B9N4B7 Predicted protein	984	2e-104
C4B8D6 AtEB1b-like protein	974	3e-103

Arabidopsis top hits (Blast detail)	Score	e value
AT5G62500.1 ATEB1B (END BINDING PROTEIN 1B); microtubule binding	1355	1e-149
AT3G47690.1 ATEB1A; microtubule binding	791	3e-084
AT5G67270.1 ATEB1C (microtubule end binding protein 1); microtubule binding	562	9e-058

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	3			27%


8	6			55%


10	2			18%

Unigene Members	Member information