RadishBase

| | | |

Information for unigene UN09855

FASTA Sequence

Unigene ID: UN09855	Length: 945	SSR	SNP
GCAATGTAAAAAGTCCCAAAACAAAAATTGCAATACACAATCAAAAGACATTCAAATGGAAGAAGAGATACAAAAAAAAAAGTTTC GAGATTGTTTCTCGGTTAGTATGGTCATCAAAGAAATACACGATTTATCTAATACATATGGAAACAACAATCGATCATTCATTCAT TCATTCAACAAGAAGAACAAGCATATTCTTTTTTTTTAGGTAGAGTAAGAAGAGCCCTCACCTACTCCTTTGGAAGTAATACCTCT GCAACCAGCACCTTCATGCCATTCAAGCATGATCTCAATCTCGCCGCACTCGACGTTGTTGAGCCTAAGGATCATGTCTTGCGTGA TCTTACCATTGTTCCACACGATGCTGCTTTCATCAGATAAACAGTTGTGCCTGGAGGGCTGAACCCGTTTGATAGCGCATCCATTA GGTAGCTTCAAAAGCTCCATTCCCATTTTGAGAGATTCTAAGTAGGGTTGAATGTCTAAGTTTGCATCTCCCATTTTGTCATCTCC AGTAAACTTGTCCCAGTCAAACACTGTCAAGCGGATAGGGACATTGGGATCTTTGATAGCAACGGTCATCTCTTCGTTCCATACAG GATTGCAGTTTTTCTTCACCACACGCGTCTTCAATGTCTGGTCGGCGACGGTGATAACAACGTAAGGATCGCTGCTTCTGTGGTCG CGAATGGCGAGATTAATACCTTTTTTGACGTGGATCGTTAGCAATCCCAGAGGCCTTTGATCCATTGGACTTTTTGAGAAGATTGG AGATAATCAACGAAGCTTTCGAGATAACGATGAATGATTGGAAAAAAAGGAAAGAGACTTGGGGATGATGATGATGATGAATTGAT TAGAAGAAAGAAAGTGTTTAATGTTATCCTCCCCCAAACTATTCAACACGTTCTTTCCCACAATTTGCTCATTCTATTCTTTTCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
ADK63403 C2 domain-containing protein [Brassica rapa]	899	1e-094
NP_178263 calcium-dependent lipid-binding domain-containing protein [Arabidopsis thaliana]	898	2e-094
XP_002876756 C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]	896	3e-094
XP_002887328 C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]	652	6e-066
NP_565001 calcium-dependent lipid-binding domain-containing protein [Arabidopsis thaliana]	650	1e-065

Swiss-Prot top hits (Blast detail)	Score	e value
Q8L7A4 Probable ADP-ribosylation factor GTPase-activating protein AGD11	329	7e-030
Q8LFN9 Probable ADP-ribosylation factor GTPase-activating protein AGD13	327	1e-029
Q9FVJ3 ADP-ribosylation factor GTPase-activating protein AGD12	324	3e-029
Q6DN14 Multiple C2 and transmembrane domain-containing protein 1	142	3e-008
Q5RJH2 Multiple C2 and transmembrane domain-containing protein 2	136	2e-007

TrEMBL top hits (Blast detail)	Score	e value
Q9ZVF1 Putative uncharacterized protein At2g01540	898	1e-094
Q9S7J9 At1g70790	650	7e-066
B9HJD0 Predicted protein	595	2e-059
B9SP79 ARF GTPase activator, putative	591	5e-059
A5BXZ0 Putative uncharacterized protein	572	7e-057

Arabidopsis top hits (Blast detail)	Score	e value
AT2G01540.1 C2 domain-containing protein	898	7e-097
AT1G70790.2 C2 domain-containing protein	650	4e-068
AT1G70790.1 C2 domain-containing protein	650	4e-068
AT1G70810.1 C2 domain-containing protein	516	1e-052
AT5G37740.1 C2 domain-containing protein	498	2e-050

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


11	3			30%


12	3			30%


9	3			30%


10	1			10%

Unigene Members	Member information