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Information for unigene UN09884
| FASTA Sequence |
| Unigene ID: UN09884 | Length: 617 |
| SNP | ACATGTCTTTTGTAATTATTTAAGTTTAGGAGGCACTAAACACCACTGCATCTTACTCATAAGAGATAGGGGAAAACACAAGTGAA
AAATACAAGGGCAAGACTAGATTTAAGACTGATACTCAAAGATTATCTCCGTTGATGCAACAATTAGAATTTGACGAGAAGAAACA
AGTACAAACAGCGACATATCTCTCTCTCACTTGGGGTTCCTGAGGACGATAATGACAGAGTCACCACGGAGAAACATCTTGCTGAT
GAAGCGATCTCTGTTAACAGGAAGAGCTTTCTTCTTTCCTTTCCCAGTTTTAGGTACCTCGGTCCACATTTCTCTGACGTTTTCCA
GGACCATGTTGCAGTGCCTGTCAAAAGCTCTAACACGACCAAGGAGTTTCCTGTTGTTGCGGCAATTGATGAGCACCTGAGTGTTG
TTCTTGACACTCATCATCAGAACAGAAAGGGGTCCCGTGTTGAACTCCTCCTCCTCCGTCTTTCCGTTGGTATCCTCTTCCATTGG
CCTACTCATATTCGCTTGCAGCTCAACAAATTCTCCGAAGATTAGTCTTAAACCAGCTAAATCTCGGAGCAGTCGGGAGACGAGAT
CGAGCGTTGAGAGTC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_850477 small nuclear ribonucleoprotein D2 [Arabidopsis thaliana] | 559 | 1e-055 |
| NP_566107 small nuclear ribonucleoprotein D2 [Arabidopsis thaliana] | 547 | 4e-054 |
| XP_002878480 predicted protein [Arabidopsis lyrata subsp. lyrata] | 541 | 2e-053 |
| ACU15195 unknown [Glycine max] | 537 | 5e-053 |
| ACU17317 unknown [Glycine max] | 532 | 2e-052 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q3SZF8 Small nuclear ribonucleoprotein Sm D2 | 452 | 2e-044 |
| P62316 Small nuclear ribonucleoprotein Sm D2 | 452 | 2e-044 |
| P62317 Small nuclear ribonucleoprotein Sm D2 | 452 | 2e-044 |
| Q9VI10 Probable small nuclear ribonucleoprotein Sm D2 | 448 | 5e-044 |
| Q18786 Probable small nuclear ribonucleoprotein Sm D2 | 420 | 9e-041 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| O22247 At2g47640 | 559 | 1e-055 |
| Q8RUH0 Putative small nuclear ribonucleoprotein D2 | 547 | 3e-054 |
| C6T0Y9 Putative uncharacterized protein | 537 | 4e-053 |
| C6T6A5 Putative uncharacterized protein | 532 | 1e-052 |
| Q8L3W7 Small nuclear ribonucleoprotein-like protein | 529 | 3e-052 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G47640.2 small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative | 560 | 5e-058 |
| AT2G47640.3 small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative | 560 | 5e-058 |
| AT3G62840.2 FUNCTIONS IN: molecular_function unknown; LOCATED IN: small nucleolar ribonucleoprotein complex, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative (TAIR:AT2G47640.3); Has 537 Blast hits to 537 proteins in 165 species: Archae - 2; Bacteria - 0; Metazoa - 239; Fungi - 109; Plants - 78; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink). | 560 | 5e-058 |
| AT2G47640.1 small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative | 548 | 1e-056 |
| AT2G47640.4 small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative | 548 | 1e-056 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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