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Information for unigene UN09884

FASTA Sequence
Unigene ID: UN09884Length: 617  SNP
ACATGTCTTTTGTAATTATTTAAGTTTAGGAGGCACTAAACACCACTGCATCTTACTCATAAGAGATAGGGGAAAACACAAGTGAA
AAATACAAGGGCAAGACTAGATTTAAGACTGATACTCAAAGATTATCTCCGTTGATGCAACAATTAGAATTTGACGAGAAGAAACA
AGTACAAACAGCGACATATCTCTCTCTCACTTGGGGTTCCTGAGGACGATAATGACAGAGTCACCACGGAGAAACATCTTGCTGAT
GAAGCGATCTCTGTTAACAGGAAGAGCTTTCTTCTTTCCTTTCCCAGTTTTAGGTACCTCGGTCCACATTTCTCTGACGTTTTCCA
GGACCATGTTGCAGTGCCTGTCAAAAGCTCTAACACGACCAAGGAGTTTCCTGTTGTTGCGGCAATTGATGAGCACCTGAGTGTTG
TTCTTGACACTCATCATCAGAACAGAAAGGGGTCCCGTGTTGAACTCCTCCTCCTCCGTCTTTCCGTTGGTATCCTCTTCCATTGG
CCTACTCATATTCGCTTGCAGCTCAACAAATTCTCCGAAGATTAGTCTTAAACCAGCTAAATCTCGGAGCAGTCGGGAGACGAGAT
CGAGCGTTGAGAGTC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_850477 small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]5591e-055
NP_566107 small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]5474e-054
XP_002878480 predicted protein [Arabidopsis lyrata subsp. lyrata]5412e-053
ACU15195 unknown [Glycine max]5375e-053
ACU17317 unknown [Glycine max]5322e-052

Swiss-Prot top hits (Blast detail)Scoree value
Q3SZF8 Small nuclear ribonucleoprotein Sm D24522e-044
P62316 Small nuclear ribonucleoprotein Sm D24522e-044
P62317 Small nuclear ribonucleoprotein Sm D24522e-044
Q9VI10 Probable small nuclear ribonucleoprotein Sm D24485e-044
Q18786 Probable small nuclear ribonucleoprotein Sm D24209e-041

TrEMBL top hits (Blast detail)Scoree value
O22247 At2g476405591e-055
Q8RUH0 Putative small nuclear ribonucleoprotein D25473e-054
C6T0Y9 Putative uncharacterized protein5374e-053
C6T6A5 Putative uncharacterized protein5321e-052
Q8L3W7 Small nuclear ribonucleoprotein-like protein5293e-052

Arabidopsis top hits (Blast detail)Scoree value
AT2G47640.2 small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative5605e-058
AT2G47640.3 small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative5605e-058
AT3G62840.2 FUNCTIONS IN: molecular_function unknown; LOCATED IN: small nucleolar ribonucleoprotein complex, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative (TAIR:AT2G47640.3); Has 537 Blast hits to 537 proteins in 165 species: Archae - 2; Bacteria - 0; Metazoa - 239; Fungi - 109; Plants - 78; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).5605e-058
AT2G47640.1 small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative5481e-056
AT2G47640.4 small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative5481e-056

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
104  33%
 
64  33%
 
122  17%
 
92  17%

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