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Information for unigene UN09914
| FASTA Sequence |
| Unigene ID: UN09914 | Length: 938 |
SSR | | GGCCGTCGAGGAGAACGAGCCTGAAGCAACGTTCTCGGAGGGAGATGTGGGCGAAGGAGGCGACTTCCCGGAGCCGCCGGAGGAAG
CGAAACTCTTCGTCGGAAACTTGGCTTACGATGTGGATAGTCAAGCCTTGGCTATGCTCTTTGAGCAAACCGGTACTGTTGAGATC
GCTGAGGTTATCTACAACAGGGAGACAGACCAGAGTCGTGGGTTTGGATTTGTGACGATGAGTACGGTGGAGGAAGCTGAGACTGC
TGTTGAGAAGTTCAACCGTTATGACCTGAACGGAAGGCTTCTGACAGTAAACAAGGCAGCACCTAGAGGATCACGTCCAGAACGCC
AACCTCGGGTGTATGAACCTGCGTTCAGAGTCTATGTGGGAAACCTACCGTGGGATGTGGACAACGGTCGTCTAGAGCAAGTATTC
AGTGAGCATGGTAAGGTCATGGAAGCTCGTGTGGTTTATGACCGTGAGACGGGTCGCTCACGTGGGTTCGGTTTTGTCACAATGTC
TAACGAGACTGAACTCAATGACGCTATCGCTGCTCTTGATGGACAGAACATGGAGGGTAGAGCAATCAGAGTGAATGTAGCGGAGG
AGCGTCCGAGGCGTGGGTTTTAAAAGGATTGAGATTATCTCTTCTGCCAGTTTCCTCTCTCTCTCTCTTCCTATCGCTTTGCATTT
TGTTTAGACGAGATTCTTACACTCTTTGATGATTTTTTGTTGTGTCTGAACCCCTTTGATGATTTTTTTGTTGTCTGAACTAATGC
TTTTACTATATAGCACATAACCGCCTTCAGTACTTTGACTTACAAATTAGTTTAGACCCAAGACTTGAGAGGTTAGTGATGTATTG
TTATTAGTGAGTCTTGGCTAGTAATCACTCTTCGAAGTTAATTAAAAAAAAGAAGAAAGAGATAATATCTTAACATTT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002867645 RNA-binding protein cp31 [Arabidopsis lyrata subsp. lyrata] | 974 | 3e-103 |
| BAA06520 RNA-binding protein cp31 [Arabidopsis thaliana] | 910 | 7e-096 |
| BAA06521 RNA-binding protein cp31 [Arabidopsis thaliana] | 910 | 7e-096 |
| NP_194208 ribonucleoprotein [Arabidopsis thaliana] | 910 | 7e-096 |
| AAA18379 RNA-binding protein 2 [Arabidopsis thaliana] | 910 | 7e-096 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q04836 31 kDa ribonucleoprotein, chloroplastic | 910 | 3e-097 |
| P19682 28 kDa ribonucleoprotein, chloroplastic | 775 | 1e-081 |
| P19683 31 kDa ribonucleoprotein, chloroplastic | 762 | 4e-080 |
| P28644 28 kDa ribonucleoprotein, chloroplastic | 757 | 2e-079 |
| Q08935 29 kDa ribonucleoprotein A, chloroplastic | 495 | 4e-049 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q39209 RNA binding protein (Fragment) | 910 | 5e-096 |
| Q94EH5 AT4g24770/F22K18_30 | 906 | 1e-095 |
| B9RAR1 Ribonucleoprotein, chloroplast, putative | 832 | 5e-087 |
| B9I3I8 Predicted protein | 830 | 9e-087 |
| Q9FGS0 AT5g50250/K6A12_11 | 825 | 3e-086 |
| Arabidopsis top hits (Blast detail) | Score | e value |
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| AT4G24770.1 RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding / poly(U) binding | 911 | 2e-098 |
| AT5G50250.1 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative | 825 | 2e-088 |
| AT1G60000.1 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative | 386 | 2e-037 |
| AT2G37220.1 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative | 264 | 2e-023 |
| AT3G53460.1 CP29; RNA binding / poly(U) binding | 263 | 3e-023 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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