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Information for unigene UN09924
| FASTA Sequence |
| Unigene ID: UN09924 | Length: 1054 |
SSR | | GGAACACAACACAACACAACACCTTCTTCTCTTTTCCCCCATTATCTCCTTCCTTCCTTCTCCGACAATGGCTACTTTCCTAACAG
CTGTCGTTTCAATCAAACCCACACTCTTCTCATTCCACTCCGAGTCCTCCCCCTCTTTGCAATCTCAAACCAATGCATTCGCTCTC
AAGGCCAAAGCCTTTCCTTCTGTCCCCACAGCCATCTCTCTTCCACGGACCTCCAGGATGAGACTCATCCCTCGCGCCACGTTGGA
GACCGAAGAAAAACCCGCTTTGGACCCTAACGCAGAATCCTCAAGACGCGTCTACATCGGAAACATACCAAGAACCGTAACTAACG
AACAGCTCACCAAACTCGTCGAAGAACACGGCGCCGTTGAACAAGTCCAGGTGATGTATGATAAGTACTCAGGAAGAAGCCGTAGG
TTTGGTTTCGCTACAATGAAATCAGTTGAAGATGCCAATGCTGTCATTGAGAAGTTGAACGGCACTACAATTGAAGGACGTGAGGT
GAAGGTTAATATTACAGAGAAGCCTCTAGAATTATCATCATCATCATCATCGTCTCCTGATTTGTCGCTGCTTCAGTCTGAAGATT
CAGCTTTTGTGGATAGTCCTTACAAAGTGTATGTAGGGAATCTGGCAAAGAGTGTTACTAAAGAGATGCTTGAGAATTTGTTTTCT
GAGAAAGGGAAAGTTCTGAGTGCTAAGGTTTCGAGAGTGCCTGGTACTTCGAAATCTACTGGGTTTGGGTTTGTTACGTTTTCTTC
TGATGAAGATGTCGAAGCTGCTATTTTGGCTCTTAACAACTCTTTGCTGGAAGGACAGAAGATTCGGGTGAATAAGGCCTAGTGTG
TGTGTGTGTGAGAGAGAGAGAGAGAGGGCGAGTCTTTTGGCAGAATCGTTTTTTTTTGTATTGTACTGAGGAGTTTGTAATGCAAA
ACATTTAGAGCATAGTATCATTATCTTTGTAATCATGCTAAGTTGATGAAAGCATTAAGTTTATTTCACTCTGACTAGATGAAGAA
AATATAGGCTGTCTCTTCTACG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_566958 RNA recognition motif-containing protein [Arabidopsis thaliana] | 998 | 5e-106 |
| BAH19693 AT3G52150 [Arabidopsis thaliana] | 993 | 2e-105 |
| XP_002876128 hypothetical protein ARALYDRAFT_348313 [Arabidopsis lyrata subsp. lyrata] | 949 | 2e-100 |
| CAB41335 putative protein [Arabidopsis thaliana] | 934 | 1e-098 |
| XP_002513193 ribonucleoprotein, chloroplast, putative [Ricinus communis] | 735 | 2e-075 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P82277 30S ribosomal protein 2, chloroplastic | 703 | 4e-073 |
| Q08935 29 kDa ribonucleoprotein A, chloroplastic | 349 | 4e-032 |
| Q9ZUU4 Ribonucleoprotein At2g37220, chloroplastic | 345 | 1e-031 |
| P49313 30 kDa ribonucleoprotein, chloroplastic | 342 | 3e-031 |
| P49314 31 kDa ribonucleoprotein, chloroplastic | 341 | 3e-031 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8VYM4 Putative uncharacterized protein At3g52150 | 998 | 3e-106 |
| B9DG26 AT3G52150 protein | 993 | 1e-105 |
| Q9SUZ0 Putative uncharacterized protein F4F15.260 | 934 | 9e-099 |
| B9RHH4 Ribonucleoprotein, chloroplast, putative | 735 | 1e-075 |
| B9HNK5 Predicted protein | 729 | 5e-075 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G52150.1 RNA recognition motif (RRM)-containing protein | 999 | 1e-108 |
| AT3G52150.2 RNA recognition motif (RRM)-containing protein | 999 | 1e-108 |
| AT3G52380.1 CP33; RNA binding | 366 | 4e-035 |
| AT2G37220.1 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative | 345 | 1e-032 |
| AT4G24770.1 RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding / poly(U) binding | 207 | 1e-016 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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