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Information for unigene UN09985

FASTA Sequence
Unigene ID: UN09985Length: 1464 SSR 
CTTTATTGCATTAGCGACAAATCCCCCTTTTCTAGGTTTGCTCTCTCTCTTCCATCACGATGCAGCAGCCACCGCAAAACCCCACC
GGAGCAGGGCAGCAGATCCCATCTGACCAGCAAGCCTATCACCAGCAGCAACTCTCGTGGATGATGCAACAACAACCGCAGCAGGG
CCAGCAATGGAACCAGCAGCAGTCAGCGCCGTCACAGGTAGGTCAACAGCCCTACGGATCTCAGAATCCAGGATCCGATAACGAGA
TTCGCTCCTTGTGGATCGGTGCCTTGCTCCCATGGATGGACGAAAACTACATCATGACCGTCTTCGCTCAGACCGGCGAGGTTCAA
TCTGCTAAAGTCATTCGCAACAAGCTGACTGGGATGGGTGAGGGTTACGGATTCATCGAGTTCGCTAGCCACGCTGCAGCCGAGCG
TGTTTTGCAGACGTACAACGGCACTCAGATGCCTAACTCTGACCAGACCTTTAGGCTGAACTGGGCTCAGGCCGGGGCTGGTGGTG
AGAGACGCCAAGCTGAAGGGCCTGAGTACACTATCTTTGTAGGGGATCTGGCTCCTGAGGTCACTGACTTCGTGTTGACGGAGACG
TTTTCGAATGTGTACGCGTCTGTCAAGGGGGCTAAGGTTATGATGGACAGGACCACTGGACGGTCTAAGGGGTATGGTTTCGTTAG
GTTTGGGGATGAGAGTGAGCAGATGCGTGCTATGGGGGAGATGAATGGTCAGTACTGCTCGTCTAGGCCTATGCGTATTGGTCCGG
CTGCCAACAAGAAGCCTCTTACAATGCAGCCAGGCATGTATCAGGACAACCAAGGAGGAGGAAATCCTGGAGAAAGCGATCCAAGT
AACACAACTATATTTGTTGGTGCTCTGGATGCTAGCGTTACAGACGATGAATTGAGGTCAGCTTTTGGTCAGTTTGGAGAACTGAT
TCACGTGAAAATACCTCCAGGGAAGCGTTGTGGATTCGTTCAGTATGCCACCAGGGCGTCTGCAGAGCATGCACTATTGAATCTGA
ACGGAACACAACTAGGTGGACAAAACATTCGTCTTTCATGGGGACGTAGTCCCAACAACCAGGCACAGAGTCATCAACCTCAATGG
AATGGTGGTGGTGGTGGTGGGTACTATGGAGGATACCCTCCACAGCCACAGGGGTATGAACCATATGGTCATGGAGCTCCTCGTCC
TCAGGATCCTAGTGCGTACTATGGTGGCGGTTACGGTGGCGGCTATGGCAACTATCAACAGCAACGGCAGTGAAAGATCATCAATA
CACCAGCTATTTCTACCAAAGTCTTGAGACAGTGGACAAATTATATATCAGTCGTCGTTGAGTCTTGATAGGAAATTAGATTTTAA
GAGTGTTTTTGTCTTTTACATTGATGTGAGTTTGGTTTTGCTATTGGGTTAATGTTATGTTTTTTAAACAAAAAAAAGTTGACTTT
GC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002867529 hypothetical protein ARALYDRAFT_913848 [Arabidopsis lyrata subsp. lyrata]15283e-167
CAB36546 putative DNA binding protein [Arabidopsis thaliana]14862e-162
NP_567764 RNA recognition motif-containing protein [Arabidopsis thaliana]14862e-162
XP_002864364 hypothetical protein ARALYDRAFT_495572 [Arabidopsis lyrata subsp. lyrata]14711e-160
BAB08769 unnamed protein product [Arabidopsis thaliana]13957e-152

Swiss-Prot top hits (Blast detail)Scoree value
O60176 Uncharacterized RNA-binding protein C23E6.01c6265e-064
O13759 RNA-binding post-transcriptional regulator csx13667e-034
Q00539 Protein NAM82483e-020
P32831 Negative growth regulatory protein NGR12351e-018
Q15427 Splicing factor 3B subunit 42223e-017

TrEMBL top hits (Blast detail)Scoree value
Q93W34 Putative DNA binding protein14861e-162
Q9SZ39 Putative DNA binding protein14861e-162
Q9FFU0 Similarity to polyadenylate-binding protein 513955e-152
Q9FPJ8 AT5g5490013947e-152
B9I0E1 Predicted protein12745e-138

Arabidopsis top hits (Blast detail)Scoree value
AT4G27000.1 ATRBP45C; RNA binding14868e-165
AT5G54900.1 ATRBP45A (RNA-binding protein 45A); RNA binding13944e-154
AT1G11650.2 RNA-binding protein 45 (RBP45), putative10898e-119
AT1G49600.1 ATRBP47A (Arabidopsis thaliana RNA-binding protein 47a); RNA binding9096e-098
AT1G47500.1 ATRBP47C' (RNA-binding protein 47C'); RNA binding8471e-090

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
216  75%
 
101  13%
 
71  13%

Unigene MembersMember information