RadishBase

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Information for unigene UN09988

FASTA Sequence

Unigene ID: UN09988	Length: 764	SSR	SNP
TAAAACCAAGTAAATTCAAAAGATTGAACATACATGAATCGGGGAAGACACTGTTTTTTTGGATAATTTGCACACAAGGATAAACT TCAGATGATCAATCGAACATCATCATCATCATCACCATCCACATAGACCAATTTTTTATCACAAATTTAGAAAAAAAGCTTGAGAA CGACAATGGAGTACCCCCAGATACATACTTTAGTATTAGAAGGGGCAAAGATTTTCACTACTAGAAGCAAGTGCCTTCTGGAGGTT GAACAAGCTTACGGTTATGCGACGTAGACATCTCCTTCTTCAGCTGTGTCAGTATTGTCTCCATTGTGTAGTCCCTTTGCCAGTTC GCAAGAAGCCCAAACTTCTTAGGTTCCACCACTCCTGTTTCATTGTTGACGCAAGCCATGTTGATACGTGAATGGAAACGGACAGT GGGAGGTTTTTCCGGGTAATCTTTGTCACAGAAGAGCTTCAACTGATAGATCCTACCTTCATGAACAGTGTTATGAGGAGCGATGA TAGTGCCAGTCCAAGAGCGCATGTAAATGTCATCTCCATCATCCATTCCATAGCTCACAGTTCCATCTCCTATACCTTTCTCCCCA CGTTCAAGCTCCTCTAGCAACCGGAAATTCCTCGGAACAACAACACTCGATCCTCCAGAGCCAAGAGTCATGTTGTGGATTCGATC CGATTTTAGTTTATGAGATCTGGTCGTGGCGAGAGAGACGAGAGATCCGCTGAAGGAGAATCTGGTGAAAGGACCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_566968 ubiquitin-conjugating enzyme E2 variant 1D [Arabidopsis thaliana]	759	1e-078
XP_002323400 predicted protein [Populus trichocarpa]	743	1e-076
XP_002309399 predicted protein [Populus trichocarpa]	736	7e-076
ADU56174 ubiquitin-conjugating family protein [Jatropha curcas]	736	7e-076
ABA40444 ubiquitin-conjugating enzyme family protein-like protein [Solanum tuberosum]	734	1e-075

Swiss-Prot top hits (Blast detail)	Score	e value
Q9SVD7 Ubiquitin-conjugating enzyme E2 variant 1D	759	7e-080
Q9SJ44 Ubiquitin-conjugating enzyme E2 variant 1C	703	2e-073
Q93YP0 Ubiquitin-conjugating enzyme E2 variant 1A	590	3e-060
Q9CAB6 Ubiquitin-conjugating enzyme E2 variant 1B	573	3e-058
Q54D06 Probable ubiquitin-conjugating enzyme E2 variant	454	2e-044

TrEMBL top hits (Blast detail)	Score	e value
A9PBP9 Predicted protein	743	7e-077
A9PCP1 Predicted protein	736	5e-076
Q3HVN0 Ubiquitin-conjugating enzyme family protein-like protein	734	8e-076
C8CP48 Ubiquitin-conjugating enzyme variant	732	1e-075
B7FNB3 Putative uncharacterized protein	726	7e-075

Arabidopsis top hits (Blast detail)	Score	e value
AT3G52560.1 UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4); protein binding / ubiquitin-protein ligase	760	5e-081
AT3G52560.2 UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4); protein binding / ubiquitin-protein ligase	748	1e-079
AT2G36060.1 ubiquitin-conjugating enzyme family protein	704	2e-074
AT2G36060.2 ubiquitin-conjugating enzyme family protein	697	1e-073
AT2G36060.3 ubiquitin-conjugating enzyme family protein	688	1e-072

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


10	3			21%


7	8			57%


6	2			14%


9	1			7%

Unigene Members	Member information