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Information for unigene UN10061

FASTA Sequence
Unigene ID: UN10061Length: 1333 SSRSNP
GGATCACGGAACTGACAGATTGCAATGCTGCTCTTTCCCAGAAGCGCAAAAAGCGACAGATTCCTGAAACATTGGCTTCAATAGAT
TCTTTGGAGAGGTTCACTCAGCTATCAAGCCACCCACTTCACAAGACCAACAAACCGGGCATTTGTTCAATGGACATCCTACATTC
TAAGGATGTCATTGCTACCGGAGGACTGGATACAACTGCTGTTCTCTTTGATCGCCCTTCAGGGCAAATCTTGTCAACACTTACTG
GTCACTCGAAAAAGGTTACAAGTGTAAAATTTGTAGGTGACAGTGATCTTGTTTTAACTGCTTCTGCTGACAAGACAGTCCGTATC
TGGCGGGATTCTGGGGATAGGAATTATGCTTGTGGGCATACATTGAATGATCATTCTGCAGAGGTGCGAGCTGTAACTGTGCATGC
CACAAATAAATACTTTGTGTCGGCATCTCTTGACAGTACATGGTGCTTCTACGATCTTTCCTCTGGCTTATGCCTTGCAAAGGTGT
CGGATGATTCTGAGAGGGTGGATTACACGGCTGCTGCTTTTCATCCTGATGGTCTTATTCTCGGAACCGGTACTTCTCAATCTGTT
GTTAAGATTTGGGATGTTAAGAGTCAGGCAAATGTGGCGAAGTTTGATGGACACACCGGTGAAGTTACCTCTATATCTTTCTCTGA
GAATGGTTATTTCCTCGCGACTGCTGCCGAGGATGGTGTTAGGTTGTGGGACCTGCGCAAGTTAAGGAACTTCAAGTCATTCTTAT
CCGCAGATGCAAACTCTGTGGAGTTTGACCCTAGCGGATCTTATCTTGGAGTTGCTGCATCAGATATCAGGCTATACCAGACGGCG
AGTGTGAAAGCTGAATGGAACCTTATTAAGACACTCCCTGATCTCTCCGGCACTGGTAAAGCTACATGTGTGAAGTTTGGTCCAGA
TGCACAATACGTTGCAGTTGGTTCCATGGACCGTAACCTACGAATATTTGGTCTTCCTGGTGACCAAACAGCCAATGCCGATGATG
ACTCTGCACAAGACTCTTGAAGATTCGAGAAACTCGGCAATTTTCGATGTTCATCTCCGGTTCTCTCTCTCTCTGTGTATCTACAG
TTTCACAGCTATAAGGAGGATTTGTTAGTTGGCATAGTGATCTTCGTTACTTCTCTGAACGCAGACGATCACACTTGAGTTTTCTT
ACTCTTTTCATCTTATAGGTTCTTCCAAAGTTCTAATCTCTATCTCCCTCTTTGTACCTTCGAAACATGTACCAAATTGTTCATTT
TGCTGCTAAGGATCGGATCTAAATGAAACTAAGACGTTTTATC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_850206 Pre-mRNA-processing factor 19-2 [Arabidopsis thaliana]17041e-187
XP_002889510 transducin family protein [Arabidopsis lyrata subsp. lyrata]15481e-169
XP_002881277 transducin family protein [Arabidopsis lyrata subsp. lyrata]15301e-167
NP_001031471 Pre-mRNA-processing factor 19-2 [Arabidopsis thaliana]15004e-164
NP_563708 Pre-mRNA-processing factor 19 [Arabidopsis thaliana]15004e-164

Swiss-Prot top hits (Blast detail)Scoree value
O22785 Pre-mRNA-processing factor 19 homolog 217044e-189
Q94BR4 Pre-mRNA-processing factor 19 homolog 115002e-165
Q9UMS4 Pre-mRNA-processing factor 196802e-070
Q08E38 Pre-mRNA-processing factor 196767e-070
Q99KP6 Pre-mRNA-processing factor 196731e-069

TrEMBL top hits (Blast detail)Scoree value
Q2V435 Putative uncharacterized protein At2g33340.315003e-164
Q2V4Q9 Putative uncharacterized protein At1g04510.214977e-164
B9SQU0 Pre-mRNA-splicing factor, putative13793e-150
B9HKU6 Predicted protein13589e-148
B9HST8 Predicted protein13507e-147

Arabidopsis top hits (Blast detail)Scoree value
AT2G33340.1 nucleotide binding / ubiquitin-protein ligase17053e-190
AT2G33340.2 nucleotide binding / ubiquitin-protein ligase17053e-190
AT1G04510.1 transducin family protein / WD-40 repeat family protein15046e-167
AT1G04510.2 transducin family protein / WD-40 repeat family protein15011e-166
AT2G33340.3 nucleotide binding / ubiquitin-protein ligase15002e-166

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
71  14%
 
212  29%
 
94  57%

Unigene MembersMember information