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Information for unigene UN10066

FASTA Sequence
Unigene ID: UN10066Length: 960  SNP
GGACGCTTTCTAACCGAAGTTCCCAAAGTCTTCGATCTTATAGAAAGTCCTTTAATTTGGTCGATCCTGTAAAAGGGCAAACTCTT
TTTTTTTCCGACAAGACACAAGCTTCTTCTGGTTATTCGCCGAATTATAGAAACGATGTTCAATTTCTGGGGATCAAAAGACCAAC
AAGGGCAATCACGTCCTCCTCCGGAAGTTTCTTCTTCTTCGCAGCAGCAGCAGCCATGGTACTCTCCTTCTCTAGTCAGCTCGCCA
AGCTCCTCATCTCGGCCTCAAACATCTGGTCACATTCCAGCACATGTTTCACCTGGTGAAGCAGCTGGCATTATTACCTTCTTGAA
AGACAAAAGTGTGGACGAGCTCAGGAAGCTTCTATCTGACAAAGATGCGTATCAGCAGTTTCTGCTCTCTCTTGACCAGGTCAAGG
TCCAGAACAATATCAAAGATGAGCTCCGCAGAGAAACATTGCAGCTAGCTAGAGAGAACTTAGAGAAGGAGCCGCAGATAACGGAG
CTCAGAAACCAATGCAGAATCATCCGTACGACTGAGCTAGCAGCTGCGCAAGAAAAGCTTAATGAGCTGGAAAGACAAAAAGAAGA
GATCCTCAAGTTCTACTCCCCTGCTTCTCTTCTTAATAAACTTCAAGAGGCTATGAATTCAGGTTGATGAAGAATCTGAAGCTCTG
CAAGAGAAGTTCCTAGAAAAGGAGATTGATACAGCAGCTTTTGTTCAGAAATACAAGAAGCTGCGCACTATCTATCATCGACGTGC
ATTGATTCATCTTGCTGCTAAAACCTCAACCATCGGTTGAAACTATGATAACCAGTCCTTTTTTTTTTGTCTTGTGACTTATGATG
TTGTAAAAGAAATGATTTTGCTGTTTACGTTCATACTATATTGATTTGACATTGAAACCAGTCTTATGTTTTTTTCTGTAATAAGA
AAAAATACTACACC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002877902 hypothetical protein ARALYDRAFT_906697 [Arabidopsis lyrata subsp. lyrata]6948e-071
NP_190880 vacuolar protein-sorting-associated protein 37-1 [Arabidopsis thaliana]6893e-070
NP_850268 vacuolar protein-sorting-associated protein 37-2 [Arabidopsis thaliana]6615e-067
XP_002881460 predicted protein [Arabidopsis lyrata subsp. lyrata]6169e-062
XP_002519434 conserved hypothetical protein [Ricinus communis]5925e-059

Swiss-Prot top hits (Blast detail)Scoree value
Q9SCP9 Vacuolar protein-sorting-associated protein 37 homolog 17231e-075
Q3EBL9 Vacuolar protein-sorting-associated protein 37 homolog 26953e-072

TrEMBL top hits (Blast detail)Scoree value
B9S0B5 Putative uncharacterized protein5924e-059
B9IFT3 Predicted protein5817e-058
C6T5T2 Putative uncharacterized protein5531e-054
C6SWV9 Putative uncharacterized protein5512e-054
B9MTK7 Predicted protein5271e-051

Arabidopsis top hits (Blast detail)Scoree value
AT3G53120.1 VPS37-17231e-076
AT2G36680.1 LOCATED IN: ESCRT I complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Modifier of rudimentary, Modr (InterPro:IPR009851); BEST Arabidopsis thaliana protein match is: VPS37-1 (TAIR:AT3G53120.1); Has 348 Blast hits to 348 proteins in 85 species: Archae - 1; Bacteria - 4; Metazoa - 236; Fungi - 19; Plants - 37; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).6952e-073
AT2G36680.2 LOCATED IN: ESCRT I complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Modifier of rudimentary, Modr (InterPro:IPR009851); BEST Arabidopsis thaliana protein match is: VPS37-1 (TAIR:AT3G53120.1); Has 39 Blast hits to 39 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).5115e-052
AT2G36680.3 LOCATED IN: ESCRT I complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Modifier of rudimentary, Modr (InterPro:IPR009851); BEST Arabidopsis thaliana protein match is: VPS37-1 (TAIR:AT3G53120.1); Has 46 Blast hits to 46 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).5115e-052
AT2G36680.4 LOCATED IN: ESCRT I complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Modifier of rudimentary, Modr (InterPro:IPR009851); BEST Arabidopsis thaliana protein match is: VPS37-1 (TAIR:AT3G53120.1); Has 46 Blast hits to 46 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).5115e-052

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
92  33%
 
112  33%
 
211  17%
 
121  17%

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