 |
Information for unigene UN10079
| FASTA Sequence |
| Unigene ID: UN10079 | Length: 1278 |
| SNP | GCCTTCTCTCTAATATCAAATATTAGTTGAATATATAATAATAATAGAACACACTAAAGAGTGGGAAGCATTGATATAATAATAAT
CTATACAAACTTGGCACACCACGCTTAGAAGATAAAACTTCTGCGAAGTTCTTCTTACTTGTGACCTAAGATAATGAACTTTTGAT
GTTTTTGAATCTTCAGTAACTCCAGAATGGTTCAAGATCGACCGGACCGGTGGAGGAAGATGGAACTTCTTGATGATCGAATCCTT
TCCTCCCGAATTCAATATTTGATGATGATATATCGGTATTAGAAACTCCAGTTTCCTGCGAAACACTCAACGTTTTGAAGCTCTGC
CTTCTGTTGTTGTCAAACATGGCTTGAGAAACCGATTGTTCTTGAGCAAGAACCGGATCAGAAACATGGAGAGATTGAGGTTGGTA
TAGTGGAATCGAGCAAAGGGCAGGGTTGTTGCTGAAGTAATTGAGTAGTGTTCCTCTGGTTTCAGTTTGGTTGGAGAAGCAGGGCA
CGTAACTCTGTTCGGTCTTGGTTTTGTCATTGTTGTATGGTGAAGAATCATTTAAAGGTGGTAAGCTAGAACCTCCATAAGAACCA
ATTTGGATTAGAGTCGAAATAGGGATCTTCTTGCCTCCAGCTGTTTTATGAAACACTCTGCATATCACCCATTCATTCTTGGCGGT
TTTGGGCAAGTTGTGAGCAGATAGCTTCCCATCAAGCCTATACTCATGCATCACCCAATTTGTTTTCTGCCCTTTTGGAGCTCTTC
CTCTGTAGAAAACAAGTGTTTTCTTCATACCAACTAGTGATTTGCCTCTGAAGATCTCCTTATCCTTCCCTGTAGCCTTCCAGTAA
CCGGCTTGAGTTGCCCGGTTAGTCCTCAAACCGGTTGGATACTTTCTATCCCTCACACAGAAGAAGTACCATTCTTTCTCACCCAT
TTTTGCTTTATATGGCAACTCCCATGGCTCAGCTTTGTTCAAATCCACTTCACCAATAGCTTTAGCTGAGAAATCAATGTTGAGAA
CCTTGTTGTGAAGATAGTGGGTGATGAGTTCTTCGTCTGTTGGATGAAACCTAAACCCAGGAGGCAAAACCATCTGCTCATCATCT
TCCTTGTGAAACCCACCAAAAGTTTCCATCTTTTTTTTATCACCCAAGCAACCTTTAAACCCTAGAAGAAAAGCAAATATCTGATC
CAGCAACAAAAACAAAATCTTATTTGATAGAAAAGGTGTGTTTCTCAAAAGTTTTTCTATCTGATCTTGAATCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_568182 NAC domain containing protein 80 [Arabidopsis thaliana] | 1464 | 6e-160 |
| XP_002871283 ANAC079/ANAC080/ATNAC4 [Arabidopsis lyrata subsp. lyrata] | 1453 | 1e-158 |
| NP_850789 NAC domain containing protein 80 [Arabidopsis thaliana] | 1394 | 8e-152 |
| XP_002866435 ANAC100/ATNAC5 [Arabidopsis lyrata subsp. lyrata] | 1024 | 6e-109 |
| NP_200951 NAC domain containing protein 100 [Arabidopsis thaliana] | 1015 | 7e-108 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O04017 Protein CUP-SHAPED COTYLEDON 2 | 651 | 5e-067 |
| Q9FRV4 Protein CUP-SHAPED COTYLEDON 1 | 635 | 4e-065 |
| Q9S851 Protein CUP-SHAPED COTYLEDON 3 | 586 | 2e-059 |
| Q84TE6 NAC domain-containing protein 21/22 | 504 | 5e-050 |
| Q93VY3 NAC domain-containing protein 72 | 504 | 5e-050 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9FLR3 At5g07680 | 1464 | 4e-160 |
| Q8LAN9 NAM (No apical meristem)-like protein | 1394 | 5e-152 |
| Q9FLJ2 NAM (No apical meristem)-like protein | 1015 | 5e-108 |
| Q8LF13 NAM, no apical meristem,-like protein | 980 | 6e-104 |
| B9I557 NAC domain protein, IPR003441 | 928 | 6e-098 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G07680.1 ANAC080 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 80); transcription factor | 1465 | 2e-162 |
| AT5G07680.2 ANAC080 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 80); transcription factor | 1395 | 2e-154 |
| AT5G61430.1 ANAC100 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 100); transcription factor | 1015 | 3e-110 |
| AT5G39610.1 ATNAC6 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 6); protein heterodimerization/ protein homodimerization/ transcription factor | 799 | 3e-085 |
| AT3G29035.1 ATNAC3 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 3); protein heterodimerization/ transcription factor | 733 | 1e-077 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
