 |
Information for unigene UN10085
| FASTA Sequence |
| Unigene ID: UN10085 | Length: 1376 |
SSR | | GGACTTAAAAAAAACACACACACACCTCATCACCACCGACCCGATCCGATCTCATCACACACCATGGTTGACCCGGCGAACACCGT
TGGAATTCCGGTTAACCCGACACCGCTTCTGAAAGACGAGCTCGACATCGTGATCCCGACGATCCGAAACCTCGATTTCCTCGAGA
TGTGGAGGCCCTTTCTCCAGCCGTACCATCTCATCATCGTCCAGGACGGAGATCCCACGAAGAAGATCCACGTCCCCGAGGGCTAC
GACTACGAGCTCTACAACAGGAACGACATTAACCGTATCCTCGGCCCCAAAGCTTCTTGCATCTCCTTCAAGGACTCTGCTTGCCG
CTGCTTTGGCTACATGGTCTCTAAGAAGAAGTACATCTTCACCATTGATGACGATTGCTTCGTTGCTAAGGATCCATCTGGGAAAG
CAGTGAACGCTCTTGAGCAACACATCAAGAATCTTCTCTGTCCATCGACTCCATTGTTCTTCAACACCTTGTACGATCCTTACCGT
GAAGGTGCTGACTTCGTTCGTGGATACCCTTTCAGTCTTCGTGAAGGTGTTACCACTGCTGTTTCCCATGGTCTCTGGCTCAACAT
CCCTGACTACGACGCTCCTACCCAACTCGTCAAGCCTAAGGAGAGGAACACTAGGTATGTGGATGCTGTGATGACCATCCCAAAGG
GAACACTTTTCCCAATGTGTGGTATGAACTTGGCTTTCGACCGTGATTTGATTGGACCAGCTATGTACTTTGGTCTCATGGGTGAT
GGTCAGCCTATTGGTCGCTACGACGATATGTGGGCTGGTTGGTGCATCAAGGTGATATGTGACCACTTGGGGTTGGGAGTGAAGAC
CGGTTTGCCATACATATACCACAGCAAAGCTAGCAACCCGTTTGTGAACCTGAAGAAGGAATACAAGGGAATCTTCTGGCAGGAGG
ATATCATTCCTTTCTTCCAGAACGTGAAGCTATCTAAGGAAGCAACCACTGTTCAGCAATGCTACCTTGAGCTCTCAAAGATGGTC
AAGGAGAAGCTGAGCTCACTTGACCCGTACTTTGACAAGCTTGCAGACGCCATGGTCACATGGATTGGGCTTGGGATGAGCTTAAC
CCAGCAGTTACTGCTTGAGCAAACCAAAAAAGACCACCGCAGTTTTGGTTATTTTTAGCTCAAATTATCTTTTCTATATTTTTGGA
TTTTATGAAGTTCGCTTTTGTTTAGTTGTTACTTATCATCACTTTCGCATCATCCACCTGTTTATTTATAAACAGTGGTGGATTTG
TAGTGCTATTTATGTTTTTTTTTTGCTCTTCCTCCCAGCTTTTATTTTCTTCCTTGTTTCATTAATAAAAAGCATTTCCCATGAGC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_197069 reversibly glycosylated polypeptide 2 [Arabidopsis thaliana] | 1834 | 9e-203 |
| XP_002871677 reversibly glycosylated polypeptide-3 [Arabidopsis lyrata subsp. lyrata] | 1831 | 2e-202 |
| AAC50001 reversibly glycosylated polypeptide-2 [Arabidopsis thaliana] | 1818 | 6e-201 |
| AAM65020 reversibly glycosylated polypeptide-3 [Arabidopsis thaliana] | 1812 | 3e-200 |
| NP_186872 reversibly glycosylated polypeptide 1 [Arabidopsis thaliana] | 1793 | 5e-198 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8RU27 Alpha-1,4-glucan-protein synthase [UDP-forming] 2 | 1686 | 5e-187 |
| Q9SC19 Alpha-1,4-glucan-protein synthase [UDP-forming] 1 | 1662 | 3e-184 |
| P80607 Alpha-1,4-glucan-protein synthase [UDP-forming] | 1649 | 1e-182 |
| O04300 Alpha-1,4-glucan-protein synthase [UDP-forming] | 1629 | 2e-180 |
| P85413 Alpha-1,4-glucan-protein synthase [UDP-forming] (Fragments) | 163 | 2e-010 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LFW1 AT5g15650/F14F8_30 | 1834 | 6e-203 |
| O22428 Reversibly glycosylated polypeptide-2 | 1818 | 4e-201 |
| Q8LB19 Reversibly glycosylated polypeptide-3 | 1812 | 2e-200 |
| Q9SRT9 At3g02230 | 1793 | 3e-198 |
| O22427 Reversibly glycosylated polypeptide-1 | 1784 | 4e-197 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G15650.1 RGP2 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 2); transferase, transferring hexosyl groups | 1834 | 3e-205 |
| AT3G02230.1 RGP1 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1); cellulose synthase (UDP-forming) | 1793 | 2e-200 |
| AT3G08900.1 RGP3 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 3); transferase, transferring hexosyl groups | 1606 | 9e-179 |
| AT5G50750.1 RGP4 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 4); transferase, transferring hexosyl groups | 1507 | 3e-167 |
| AT5G16510.1 reversibly glycosylated polypeptide, putative | 895 | 2e-096 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
