 |
Information for unigene UN10091
| FASTA Sequence |
| Unigene ID: UN10091 | Length: 1070 |
SSR | | GATTTCAAATGTCGTGACTAATGAGAATCCGAACTCTCTCGTGGTACAACACAATAAGTAGGCATAGATGTCACGCGTGAACATAC
AAAAGGCTGTCACTAAAAGGAAACCAAGCCATAGATAGTAGATACGTTTGTCCTCTTTTTTTTTTTTTAGAACTCATAGATACGTT
TGTCCTCTTAACTCCAAACTATGGTTTATTATTTTTTTCATACATGAACTAAACAAGCAGAGTGTGAGAGAGACCACACCCCATCT
TCACATTCTTGGGTTATATAGCAAATCAGCGAGAGTATCCAGGACTCTGGCTCCTGCTTCTCGACTCATAGCGAGATCTTGTGCTT
GATCTTGAGTACGATCGCCTTCGCCTCCTATCCCCCGGTGAAATAGATCTTGAACGGTTTTCATCATATGGCGAACGTGAATAGCT
TCTCCTGTAGACTGGCGAACGTGAGTAGCTTCTCCTGTGGACTGGCGAACGTGAGTAGCTCCTTCTGTAGTTTGGCGAACGTGAAT
AGCCAGGAGACCGGGAGTAACCATATGGAGATCTCGTAGATGTCCTTCCCCTTGATCGTTCTCTCATTTCAGAAGGCTTCTTTCTG
TTCTCCTCTGCAAACACCACAGTGATTTCGCGGCCTAGAAGAACATAGCCATCCAGATGATACTTTGCATCTGCAGCATCAGCAGG
ATCATAGTACTGCACAAAGCCAAATCCGCGAGGCTCCCCAGTGTAATAGTTACGAGGTATGTAGATATCCTTGAGACGACCAAACC
GCCCAAATGGTCTACGGAGATCATCCGGCCGACAGTCGAGCCGGAGATTGCGAACAAGTAGACTGGTTGAGGGATCTCTACTCCGA
CCTCTGTAGTGTCCCACGGGACTTGGGCTTCTGTACCTTCTCCTTGGTGGTGATGGACTGTAACTATAGCTCCTCCCCATTATCAC
TCACTCTGTATCCCACCCAACCAGAGAAACAAAGTGCTCAATTCGCCTGTGATCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTTATTCAGACACCACAAAAA
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_001173443 Os03g0374575 [Oryza sativa Japonica Group] | 665 | 2e-067 |
| AAP46199 putative splicing factor [Oryza sativa Japonica Group] | 662 | 5e-067 |
| ABF96206 RNA recognition motif family protein, expressed [Oryza sativa Japonica Group] | 657 | 2e-066 |
| XP_002465213 hypothetical protein SORBIDRAFT_01g034200 [Sorghum bicolor] | 644 | 6e-065 |
| XP_002531582 serine/arginine rich splicing factor, putative [Ricinus communis] | 640 | 2e-064 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O75494 Splicing factor, arginine/serine-rich 13A | 336 | 1e-030 |
| Q9R0U0 Splicing factor, arginine/serine-rich 13A | 336 | 1e-030 |
| Q8WXF0 Splicing factor, arginine/serine-rich 13B | 316 | 3e-028 |
| P30352 Splicing factor, arginine/serine-rich 2 | 305 | 5e-027 |
| Q3MHR5 Splicing factor, arginine/serine-rich 2 | 300 | 2e-026 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| C7J0R1 Os03g0374575 protein | 665 | 1e-067 |
| B8AQ95 Putative uncharacterized protein | 662 | 3e-067 |
| Q7Y171 Putative splicing factor | 662 | 3e-067 |
| Q10KQ7 RNA recognition motif family protein, expressed | 657 | 1e-066 |
| C5WYN3 Putative uncharacterized protein Sb01g034200 | 644 | 4e-065 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G55310.1 SR33; RNA binding / protein binding | 555 | 5e-057 |
| AT1G55310.2 SR33; RNA binding / protein binding | 545 | 7e-056 |
| AT3G13570.1 SCL30a; RNA binding / nucleic acid binding / nucleotide binding | 543 | 1e-055 |
| AT3G55460.1 SCL30; RNA binding / nucleic acid binding / nucleotide binding | 403 | 2e-039 |
| AT5G18810.1 SCL28; RNA binding / nucleic acid binding / nucleotide binding | 394 | 2e-038 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
