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Information for unigene UN10119
| FASTA Sequence |
| Unigene ID: UN10119 | Length: 1478 |
| SNP | AAAAGAACAAAAAGCAAAAATAAAAAGATATTATCACCATGGCTAGCGCAGGAATTTTTGTTGCCAAGGCATATAGTACTAATGTA
GGCTCATTAATCTTGATGGCCTTGGTGTTAGGTTCTTGCGTAGCGAATGGTGAATATCTAGGTGGCCGCCGTTGCCTTGCCGCTGT
TGCCGGCAACCCTACGGTCTTCGATATTACTAAGAATGGAGCAGTGGGAACTGGTGCCACCGATTCTTCCAAGGCGTTTCTAAACA
CATGGATCCAAGTGTGTGCCAGTCCTGTACCGGCAACGCTACTAGTTCCTAAAGGAGAGTTCCTGGCTGGTCCAGTAATTTTTGCT
GGTCCATGCAAGAGCAAAGTGACCGTCGAAGTTCAAGGCACAATCACCGCTCCACCAAGCGGATACCCGACTCCTGAATGGTTCTT
ATTCGAACATGTCGATAATGTCGTCCTCACCGGACCCGGCACATTCCACGGCAAAGGTGAAGCCGTTTGGAAAGCAGATGGCTGTG
GTCAAAAGGCCGTATGCAATCTTCCTCCAACGTCTCTAAAATTCAGAAACATCTTAAATCTTGACATTTCCGGCATTAGCTCGGTC
AACGCAAAGGCCTTCCACATGTTCTTGGTAAAAACTAAAAATGTCAACGTCCAAAACATCAAGCTTATTGCCCCTGCTGAAAGTCC
CAACACCGATGGTATCCATTTGAGCAATGCGGTCAACGTTTACATCTCTGACAGTTTAGTAGCGACAGGAGACGATTGTATCTCAG
TCGGTCGTGGTTCCACCAATGTAACCGTCGAACGCGTGACTTGTGGCCCAGGACACGGCCTAAGTGTCGGTAGTCTTGGTAAGTAC
CCGAACGAGGAGAATGTTGCCGATATTCACTTTAGGAACTGCACCATGAAAGATACCGACAATGGTCTTAGAATCAAGAGTTGGGG
TGGTTCGTCTCCAAGCACAGCTGTGGACATCACCTATGAAGATATTATTATGACAAACGTCAAGAACCCAATCATCATTGACCAAA
ACTACGGCACAAGAGGCGGAGATTCAAGAGTTGCGATAAGCAATGTGCTGTTCAAGAACGTAAGAGGAACAACAATTTCAAAAGAT
GAAGTTCAGATCATGTGCAGCAAAGCAGTACCGTGCAAAGGAGTCAGCGTCGTTGATGTGGAGTTGAACTTCGTAGGTGACAAAGG
AGGACATCCCTCGTCGTCAGGAGGTTTGGTCGGAGCTCTTTGTACCAACGCCAATGTTATCTTCGGTGGAAAACTTAGCTTCCCTA
TGTGTCCCAAATAAGCTTTTTGGTATAAGTAATTTGATGTTGAAAAACAAATCAAAAATTTCCACAAACATTTTTTTGTTTATGTT
TGTGAGTTAGTTTGTGTGTTTATCAACAATAATTGCAATATATGATTTTTTATAACCTTTTCTATGACTGTAACTTTTCTATTTTT
TGTGGTGATATTAAAG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| ABW24665 pollen-specific polygalacturonase [Brassica rapa subsp. campestris] | 2084 | 1e-231 |
| XP_002892124 hypothetical protein ARALYDRAFT_887420 [Arabidopsis lyrata subsp. lyrata] | 1788 | 2e-197 |
| NP_171778 polygalacturonase 4 [Arabidopsis thaliana] | 1767 | 5e-195 |
| CBI36886 unnamed protein product [Vitis vinifera] | 973 | 6e-103 |
| XP_002301489 predicted protein [Populus trichocarpa] | 955 | 8e-101 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P49062 Exopolygalacturonase clone GBGE184 | 1767 | 2e-196 |
| P35339 Exopolygalacturonase | 783 | 3e-082 |
| P35337 Polygalacturonase | 773 | 4e-081 |
| P26216 Exopolygalacturonase | 769 | 1e-080 |
| Q39766 Polygalacturonase | 767 | 2e-080 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A8VPP7 Pollen-specific polygalacturonase | 2084 | 7e-232 |
| B9GSC9 Predicted protein | 955 | 5e-101 |
| A5AMR9 Putative uncharacterized protein | 876 | 8e-092 |
| B9GSC8 Predicted protein | 872 | 2e-091 |
| B9P6I2 Predicted protein (Fragment) | 851 | 6e-089 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G02790.1 PGA4 (POLYGALACTURONASE 4); polygalacturonase | 1768 | 2e-197 |
| AT3G07820.1 polygalacturonase 3 (PGA3) / pectinase | 795 | 1e-084 |
| AT5G48140.1 polygalacturonase, putative / pectinase, putative | 794 | 1e-084 |
| AT3G07830.1 polygalacturonase, putative / pectinase, putative | 778 | 1e-082 |
| AT3G14040.1 exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase | 773 | 4e-082 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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