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Information for unigene UN10206
| FASTA Sequence |
| Unigene ID: UN10206 | Length: 1016 |
SSR | | GGCCCCTTGACGCAGAACGAAAAAGAGAGACAACAAAGGGGAATTAGCGAAGAGTTATGCGATTTTCTTCACCAGGCGGTGTTTGA
TTCGCTTATCGATTTGTTTAGTGTAAAACATATTATATATATATAGAAGACTCTAGAAAATGATGATGATGGGTTTCGAGATTTCG
GATGAGTTTCTGGGAACGTTCGTGCCGATTTTGGTGTATTGGGTGTATTCAGGGATGTACATTTGCTTAGGATCTTTGGAGAGGTA
TCGGTTGCATTCCAAGGTGGACGAGGACGAGAAGAATCTCGTTACCAAATCCGCCGTCGTCAAGGGCGTTCTTCTTCAGCAGGCTC
TTCAGGCCATCATCTCCGTTATCCTCTTCAAGATAACAGGAAGTGATGATGCAGATGCGTCTACGACGCAGCAATTCTCCCTTCTA
CTCCTCGCTAGGCAGTTTATCATCGCCATGCTCGTTATCGACACTTGGCAATACTTCATCCATCGCTACATGCACATCAACAAGTT
CTTATACAAGCACATCCACTCTCAGCACCATCGCCTCATCGTTCCCTATTCATACGGAGCTTTATACAACCATCCACTAGAAGGCC
TTCTCTTGGACACCGTCGGTGGTGCTCTGTCTTTCCTCTTCTCCGGTATGTCCCCAAGAACCGCCATCTTTTTTTTTTCCTTCGCC
ACCATCAAGACGGTTGACGATCACTGTGGACTCTGGCTCCCCGGAAACCCCTTTCACATCTTCTTCACTAACAACTCTGCTTACCA
TGATGTTCATCATCAGCTCTATGGAACCAAATACAATTTCTCCTAGCCCTTCTTTGTCATGTGGGATAGGATTCTCGGTACTTACT
TGCCTTATTCGCTTGACAAGAGAGCCACTGGAGGGTTTGAGACACGGCCAATCAAAGTATCCAAAGATGAGTAACTTTTCTTCTTT
TTTTCGAGTTTCTTTATCATTTTCTCGCTAGAGAACCACTGTAACCTCTCTGTGTACTTGTAACTGTGTA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002892798 hypothetical protein ARALYDRAFT_888804 [Arabidopsis lyrata subsp. lyrata] | 1301 | 3e-141 |
| NP_563944 sphingoid base hydroxylase 2 [Arabidopsis thaliana] | 1300 | 5e-141 |
| AAF43928 Contains similarity to acid phosphatase from Lupinus albus gb|AB023385 and contains a Sterol desaturase PF|01598 domain. EST gb|AI995340 comes from this gene [Arabidopsis thaliana] | 1295 | 2e-140 |
| NP_177122 sphingoid base hydroxylase 1 [Arabidopsis thaliana] | 1126 | 7e-121 |
| AAG12703 acid phosphatase, putative; 5376-6903 [Arabidopsis thaliana] | 1116 | 1e-119 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O94298 Uncharacterized hydroxylase C887.15c | 504 | 4e-050 |
| P38992 Sphingolipid C4-hydroxylase SUR2 | 440 | 1e-042 |
| Q6UGB2 C-4 methylsterol oxidase | 219 | 4e-017 |
| Q15800 C-4 methylsterol oxidase | 217 | 8e-017 |
| Q5R574 C-4 methylsterol oxidase | 217 | 8e-017 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9AST3 At1g14290/F14L17_4 | 1300 | 3e-141 |
| Q9M9T3 F14L17.5 protein | 1295 | 1e-140 |
| Q8VYI1 At1g69640/F24J1.22 | 1126 | 5e-121 |
| Q9FWZ2 Acid phosphatase, putative; 5376-6903 | 1116 | 7e-120 |
| B9S8V4 Sur2 hydroxylase/desaturase, putative | 1099 | 6e-118 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G14290.1 SBH2 (SPHINGOID BASE HYDROXYLASE 2); catalytic/ sphingosine hydroxylase | 1306 | 4e-144 |
| AT1G69640.1 SBH1 (SPHINGOID BASE HYDROXYLASE 1); catalytic/ sphingosine hydroxylase | 1132 | 5e-124 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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