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Information for unigene UN10217

FASTA Sequence
Unigene ID: UN10217Length: 1015  SNP
GGAACAACTATTACTTTTGTGTTTAATTTACTTTTTGGTTCTCCAGGCAAAAAGAAAAAAAAAAAACTTTTTGGTTCTTTGGACAT
AACATTGGGAGCAAAACAGATCATATTCTTGTGAAATAAAAACAGACGGAGCAGCGAAGTCAGAAAGAATGGAGAAAGTGATGAAC
CTGATAAAGCCGAAGCCTGATCCGAAGCAACTCTTGCGTGATTGGCAACGCAAGCTTCGTCAAGAGTGCCGTAACATCGAACGCCA
AATCCGAGATATACAAAAAGAAGAGAAAACAGTTCAGAAGGCTATTAAAGAAGCTGCTAAGCGTAACGATATGGTCTCAGCAAAGG
CGCTTGCTAAGGAGATTGTGGGTGCGAGAAGAACAGTCAACCGTTTATATGAAAACAAGGCCCAGATGAATTCCATATCAATGCAC
CTCGGAGAAAGTGTTGCTGTTGCTCGAACAGTTGGACATCTGTCCAAGAGCGCAGAGGTTATGAAGCTTGTCAATAATCTCATGAA
GGCACCACAAATGGCTGCTACTATGCAGGAGTTCAGCAAAGAGATGACTAAGGCTGGAGTTATTGAGGAGTTTGTGAACGAGGCCA
TTGACAACGCACTAGATTCAGAGGATATGGAAGAAGAGATCGACGAAGAGGTCGATAAAGTATTGACTGCTATTGCTGGAGAAACC
GCTGCTGAGCTTCCAGAAGCTGTCAGGAAGGAAAGGATAAAGGTGCCTGCACAGAAGACCAGCACTTCCCGCGAGGAAGAGGCAAT
TGCAGAAGGTGTTGATGATGAGGAAGAACTGGAGGAGATTCGAGCTCGGCTCGCTAAAGTTAGATCCTAACTTGATTCAGTTGACT
CTTTTTATATACGATTTTTATTGATTCGAAAGGTGATGAGAACATAAGGCGATTGATGTGTATTGTATAATATATAATTGAATTAC
AGTATACATTGTAATCATAAGCTGTCTTTTGGTAACAAATTTTTCTTTTTTTTCATCGCATTTCATCAG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002872026 SNF7 family protein [Arabidopsis lyrata subsp. lyrata]10882e-116
NP_197686 vacuolar protein sorting-associated protein 24-1 [Arabidopsis thaliana]10837e-116
AAN60307 unknown [Arabidopsis thaliana]10675e-114
XP_002311070 predicted protein [Populus trichocarpa]9743e-103
ACU21093 unknown [Glycine max]9716e-103

Swiss-Prot top hits (Blast detail)Scoree value
Q9FFB3 Vacuolar protein sorting-associated protein 24 homolog 110833e-117
Q9LXH5 Putative vacuolar protein sorting-associated protein 24 homolog 27284e-076
Q9CQ10 Charged multivesicular body protein 34302e-041
Q6NY88 Charged multivesicular body protein 34264e-041
Q8CGS4 Charged multivesicular body protein 34256e-041

TrEMBL top hits (Blast detail)Scoree value
B9HLG6 Predicted protein9742e-103
C6TGZ1 Putative uncharacterized protein9714e-103
C6TD23 Putative uncharacterized protein9581e-101
Q8GVS9 Putative endosomal Vps protein complex subunit8594e-090
B8ALE9 Putative uncharacterized protein8586e-090

Arabidopsis top hits (Blast detail)Scoree value
AT5G22950.1 VPS24.110842e-118
AT3G45000.1 VPS24.27293e-077
AT3G45000.2 VPS24.25303e-054
AT2G06530.1 VPS2.12624e-023
AT5G44560.1 VPS2.22624e-023

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
102  20%
 
84  40%
 
112  20%
 
122  20%

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