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Information for unigene UN10225
| FASTA Sequence |
| Unigene ID: UN10225 | Length: 1216 |
| SNP | AATTCGAAAAACTTCACTTAGTGTTGGGTCAGATATCACATAGAAGAAAATCACAAGAGAAAAGGTATTTTAAAGTTTACAGAACT
GAAACTCTTGTTTGTTGTAGTAGTCTCAGACAACTCCTTCATACTTGTCCATGCTTTTCTCTTCCTCTTATTCGATCCTCCACCAA
CACCACCAACTGTTGCTTTTTTCTCAGGAACACTTTCCGGCTCAACTGGTTTCTTACTTTTGGATTTCCTTATTCTCTTCTCTCTC
TCCAGTGTAAGCATTGGCTTTGGTGTATTCACCACAACACTAACATTCTCAACTCTTCTTTCAGGTGAACAAGGAAGTTGGATTTC
TTGAGGCGCTACCACCACCGTCACCTCTTTATCAATCTTGGGACGTGGACGAGTTGTTTTCGGCTTGGGCGGGTACATGTCTTTCA
TCTGACCTTTTGTAGTACCTCTCTTGAGATTACGGTGAGAACACAAGTTGCAGTAGTAAACTACATTGTTCTGAGGCAGAAACATG
TTAGGCTTCTTCTTGTACCTTGTCCTCATGTGTTTCTTCTTGTTAGCCGAAACCTTGTCGATTCTAACATTACAATTGAAGCCAGG
CTGAAGAACAGTCTCACACCTTTGACAAGAGAAGAGGTCAGGATCGTGAGGAATGTCGGAAGCTTGTCCATCGGCTGCGAGACGCC
GACCGAAGAAAGTAGCTAAGGACGGGATGGGAGAATCTCCGCCGGTAGACCAGAGAGCGAGATTCTTCAAGTGCTCGTGTCTGAGC
ACAGACTTGAGATTAGGTCCTCCTTGAGCTTTTGTAAGCTTGTTAGCTCCTCCCCGTTTCCCCATCTCTCCGCGTTCTTGCTCAGT
TCTTTTCGTTATTACTAAAGAGACGAAACAGATGAGAGAATATTATGGCGGCTTGAACTCCAGCTTCAAATCCAGAAGCGAAAATA
CCTAGAGCTTTCGAAACACAAATACAGAACGAAAGTGGTAATGACGGTCCTGTTCTTTTCCCGGTCGCAGCGACCCGCGACCAGCG
ACCTGTCTTTCTCGAGATTGAATCCGGAAGAGGAAGTTAAAAATCTCAAAATCAAAGCGAGAGAGAGAGTTGTTGCTTTTTCTCTC
TTGGGAGAAACCTTCTTTTTCGTCCCCTCTCTGCTTTTGCGCTGCTGTGTTGTTTATCGTGCGCTCTATCAAACTGACTTTCCTAC
ACTAAAATACCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_198943 uncharacterized protein [Arabidopsis thaliana] | 799 | 7e-083 |
| XP_002870646 hypothetical protein ARALYDRAFT_916082 [Arabidopsis lyrata subsp. lyrata] | 775 | 4e-080 |
| BAB11103 unnamed protein product [Arabidopsis thaliana] | 658 | 2e-066 |
| XP_002529729 conserved hypothetical protein [Ricinus communis] | 417 | 1e-038 |
| XP_002509798 conserved hypothetical protein [Ricinus communis] | 370 | 4e-033 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q84VV1 At5g41270 | 806 | 8e-084 |
| Q9FHD6 Genomic DNA, chromosome 5, TAC clone:K1O13 | 658 | 1e-066 |
| B9SUR0 Putative uncharacterized protein | 417 | 1e-038 |
| B9RCB4 Putative uncharacterized protein | 370 | 3e-033 |
| B9GWI5 Predicted protein | 333 | 5e-029 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G41270.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: RNAse P, Rpr2/Rpp21 subunit (InterPro:IPR007175); Has 45 Blast hits to 45 proteins in 15 species: Archae - 0; Bacteria - 21; Metazoa - 8; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 821 | 8e-088 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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