RadishBase

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Information for unigene UN10228

FASTA Sequence

Unigene ID: UN10228	Length: 1201	SSR
GATGATTAAAAATGAAACTAGTATATAGCCCTCAACAAAAATTGTTGTTCTTACAAAACCAGTAACATACGAGACTACTAGTTATG AGATTTACCCAGAGAGTGGGTGTTTAGAAAGACATAAGACAACACCTTCTAAAAGACAAGACACTAACAAGAATTAATCAAATACA TACAAAATATATATGAGAAGTTTCCTAATAATTGGAATAGTTGTTTGAGAATCATGGACGCATGAGCTTTTTTATATATAATCTTG TTCATTGATGCAACGTCAGAAAGAATAGCCCCGGTAAGGTTTGTGGTGGTGGTTCAGTCATATTTGAGCTGCTAAACCGAGCCAAG AGACGGTGTTGTTGTTGTTTGAAGACGCTTTGGCTGGATCGCTTAGTTGGTATGGTGCCTTTGACGTAACTCTATCCTTTCTCTTG GCCTAGAACCGATGGAGTGAAGCTCTTCTAGCAATAGGAAGTTCGCATGCCATTGCAGTTGAGGAGGATATGATTGGCTCTTGTTG TGCTGCGGTTTTCATGAGATGAGGAGCTTGGTTAGAGGTAGAAGCTCTGACCTCGGTTTGATTCTTGGCTAAGTTGAGAGTAGATG TGAAACCGGTGAAGCTTTTAGCGGTTCCTTTGCTAGCCAAGTTCATCACTTCTTTGGCTTTCTCAGCAGAAAAGTCGTTGAACACA ATCACCTCCCCGTTGTAGAATATAGTCAACGGTGCAGTTTGTGGCTCTGGTTTCACAGATCTAGTAGTAGTAATGACTTGTGTCGT TTTGAGGACATCTTCTTCCTTGGGGAGAGAGGAAGATGAGGAAGAGAAGCTTGGTTGCCGAGTAAACAGATTCACCGGTTTAACAT CTTGACCAATCGTCATGGAAGGAGCTTCACAAGGGAATAAACTCATTGTTGTTGTGGGCTGACGTGAGTTGCCGTTGACATGAGGC TTGCAAGACATCCCTAAGCTGAGATCTCCAAAGCTACCGTTCTCTTTCAGATACTGACTCAGCCGACTACACGTAAGGGAGAAGCC CGGCTTTCTGGAGAATCTCCGAGTAGCGGCGGAATCAGAGCACTCCATAGAACTTGACATCATTATAAGAAAACTACGTTTCAGTT TCAGTTTCTGTCTTCTTCTTCTTCTTCTTCTTCTTGCAAAATTGAGATTTGTCACGAGGGAGAAATGTTGGGTTGGTTCCTCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_564075 protein TIFY 10A [Arabidopsis thaliana]	835	5e-087
AAM65383 unknown [Arabidopsis thaliana]	829	2e-086
BAJ33919 unnamed protein product [Thellungiella halophila]	663	4e-067
NP_565096 protein TIFY 10B [Arabidopsis thaliana]	658	2e-066
AAM64554 unknown [Arabidopsis thaliana]	654	5e-066

Swiss-Prot top hits (Blast detail)	Score	e value
Q9LMA8 Protein TIFY 10A	835	2e-088
Q9S7M2 Protein TIFY 10B	661	3e-068
Q9C5K8 Protein TIFY 3B	188	2e-013
Q9LDU5 Protein TIFY 11A	181	1e-012
Q9LVI4 Protein TIFY 6B	122	1e-005

TrEMBL top hits (Blast detail)	Score	e value
Q3ED96 Uncharacterized protein At1g19180.2	575	5e-057
A9PIL0 Putative uncharacterized protein	434	1e-040
B9ST81 Putative uncharacterized protein	387	3e-035
A5C160 Putative uncharacterized protein	366	8e-033
B9GVY7 Predicted protein	338	1e-029

Arabidopsis top hits (Blast detail)	Score	e value
AT1G19180.1 JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1); protein binding	841	4e-090
AT1G74950.1 TIFY10B	658	6e-069
AT1G19180.2 JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1); protein binding	594	2e-061
AT5G20900.1 JAZ12 (JASMONATE-ZIM-DOMAIN PROTEIN 12)	188	2e-014
AT1G17380.1 JAZ5 (JASMONATE-ZIM-DOMAIN PROTEIN 5)	181	1e-013

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


8	8			100%

Unigene Members	Member information