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Information for unigene UN10316
| FASTA Sequence |
| Unigene ID: UN10316 | Length: 1074 |
SSR | | GCAAGGTTATGAGGGATCCTAGTGGTGCTAGCAAAGGATCAGGGTTTGTTGCCTTCTCTGCTGCTAGTGAAGCTTCTAGAGTGCTG
AATGAAATGAATGGTAAAATGGTTAGTGGCAAACCGTTGTATGTTGCTCTAGCACAAAGGAAGGAAGAAAGAAGGGCTAAGCTGCA
GGCACAGTTTTCTCAGATGAGACCTGCTTTTATCCCCGGTATGGGTCCTCGTATGCCAATGTTCCCAGGCGGTGCTCCAGGTCTTG
GACAACCGATGTTTTATGGTCAAGGACCTCCACAAATGATCCCTCACCAGACTGGATTTGGATATCAGCCTCAGATGGTTCCTGGC
ATGAGGCCAGGCTATTTCGGCCCGATGATGCAGCCAGGTCAGCAAGGGCCACGACCAGGTGGAAGACGGTCAGGTGATGGACCTAT
GCGCCACCAGCCTCAGCAACCAATGCCATATATGCAGCCACAGATGATGGCAGGAGGACGTGGACACCGTTACCCTCGTGGTAGAA
ACATGCAAGACGGTCCAATGCCTGGAGGAATGGTTCCATTTCCTTATGACATTAATGGAGTGCCTCTTATGCCTGCTGGTGCATTG
GCTTCTTCCCTTGCTCAAGCCTCACCTGCTCACCAAAGAACTATCCTGGGTGAGACTCTGTACCCATTAGTGAACAAGATAGAGCA
CGAGAATGCTGCCAAAGTGACGGGTATGCTTTTGGAGATGGATCAGACAGAAGTGTTGCATCTGATAGAGTCACCAGAGGCTCTAA
ATGCTAAAGTTTCAGAGGCGTTGGATGTGTTGAGAAACGTGAATCAGCCTAGTGAAGGCAAGAGTGGTAGCCCAAGTGATATGATG
GCTTCACTTTCGATTAATGATCACTTGTGAGAAGCTTTTGTCTTTGAGTACTGCTTTGAACTCTCTTTCTCTCTCTCTCTCTCTGA
TTGACAAAATTTTTGCGGAATGGTTGTTTTCTGTTTTGACTTGAATTGATGCTTTTTTGGTTGGATAATCTTTTTTTTTGCTATTG
CAATTACAACTTTGCGACTGGTAAAAAGGCTTTTTATTATTC
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| GenBank top hits (Blast detail) | Score | e value |
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| XP_002878680 PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata] | 1294 | 2e-140 |
| AAK25927 putative poly(A) binding protein [Arabidopsis thaliana] | 1289 | 9e-140 |
| NP_179916 poly(A) binding protein 4 [Arabidopsis thaliana] | 1289 | 9e-140 |
| CBI19489 unnamed protein product [Vitis vinifera] | 962 | 8e-102 |
| ABK94932 unknown [Populus trichocarpa] | 928 | 7e-098 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P42731 Polyadenylate-binding protein 2 | 809 | 2e-085 |
| O64380 Polyadenylate-binding protein 3 | 605 | 8e-062 |
| Q05196 Polyadenylate-binding protein 5 | 541 | 2e-054 |
| Q5KBW2 Polyadenylate-binding protein, cytoplasmic and nuclear | 450 | 8e-044 |
| Q4P8R9 Polyadenylate-binding protein, cytoplasmic and nuclear | 426 | 5e-041 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| O22173 Putative poly(A) binding protein | 1289 | 6e-140 |
| Q9C5J0 Putative poly(A) binding protein | 1289 | 6e-140 |
| A9PEX9 Putative uncharacterized protein | 928 | 5e-098 |
| Q9M6E6 Poly(A)-binding protein | 886 | 3e-093 |
| Q9M6E5 Poly(A)-binding protein (Fragment) | 880 | 2e-092 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G23350.1 PAB4 (POLY(A) BINDING PROTEIN 4); RNA binding / translation initiation factor | 1290 | 3e-142 |
| AT1G49760.1 PAB8 (POLY(A) BINDING PROTEIN 8); RNA binding / translation initiation factor | 841 | 3e-090 |
| AT4G34110.1 PAB2 (POLY(A) BINDING 2); RNA binding / translation initiation factor | 809 | 2e-086 |
| AT1G22760.1 PAB3 (POLY(A) BINDING PROTEIN 3); RNA binding / translation initiation factor | 605 | 7e-063 |
| AT1G71770.1 PAB5 (POLY(A)-BINDING PROTEIN 5); RNA binding / poly(A) binding / translation initiation factor | 541 | 2e-055 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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