RadishBase

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Information for unigene UN10367

FASTA Sequence

Unigene ID: UN10367	Length: 1040	SSR
GGAAGTAAAGAGTACATTTCATTGCGCGCTAAATATAAGTTGTTCTTGAAGGATGAAAGTAAATAATACATTTCATTGCAACTGAT TGCTACGCAACGTGCAAGTTGCAAATGGTCCTGGTCCATAGCTAAAAAAAAATAACAACTTTTAATCATACAACATCCAAAGTAAA TATCATTTTGTCCCTCTCCCTCAGTCTCCTTCTACCCCTCCTCTACCGGAGACTTTGGTCTGAGACACCATTCCTCGCCAAAGTTT CTCTAACATCACATTCTGAAGTAGTCTTCAATCAGTGCAATTAAAACCGTGACAAACCGAAAGCCAGATAATGAGAACAAGTAGTA GCAAGATCCCGAGAACCACAAGTTTTATCTTCATGTTCTGGTACCACAGTTTCCTCCTCACTTGTGTCCCTTGTTTCTTGTACTCT TGCGCCTGAAAGCGTAGATTCTCGGTCTTGTCAGTAAGAACCGTCAGATTTTCTCCTCTGTCGATTGCCTTGTCAATATTCTCCAA CATTATACTTTTGACTTCCGAAACTTGAGCCTTGACTTTAATTAGCTTTTCAATCTCTTCTGCATGGTCAACAATATACTTCATGT GTTCTTTCATCACCGGCCCGAACTCCTTGTTGAGACTTTTGGGGATAGCTGTACTTGCTTTTCCACCCCCATACCGTTTATTGAAA TCAGCTTTCACCCTCTCCAGAAATGCGATCGAGATTTGCTTGCTTAGAGCATCTTTCGCCACCACACAATATGCGAAGCCATCTTC GACGAGGAAGTTGAAGGTGTGGTGATCGCAGTTGTAAGTGAACTTGCTGTTGCTGGAGGAAGGAAGCTTCTGGAGACACTGTGCTG CTATCGACGGGAAGTTGCCTGTGAACTCCGTGTACTCCGCCAGGATCATAGTGCCTCTCGCCACGAAGCTGTAGATGAACGATTCC TGACCCATTGAGTCCGCCACCGACTCGCCTCAAAGAGAGAGAGAGAGAGAGTTTTGGGATCTTCTTTATTAGTTTATTTACCTTTG CTACCACC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
O23429 RecName: Full=Vesicle-associated membrane protein 724; Short=AtVAMP724; AltName: Full=SYBL1-like protein	1109	7e-119
NP_193313 vesicle-associated membrane protein 724 [Arabidopsis thaliana]	1105	2e-118
XP_002868180 hypothetical protein ARALYDRAFT_915207 [Arabidopsis lyrata subsp. lyrata]	1102	4e-118
ACU20505 unknown [Glycine max]	1029	1e-109
ACJ84394 unknown [Medicago truncatula]	1012	1e-107

Swiss-Prot top hits (Blast detail)	Score	e value
O23429 Vesicle-associated membrane protein 724	1109	3e-120
O48850 Vesicle-associated membrane protein 725	834	2e-088
Q9MAS5 Putative vesicle-associated membrane protein 726	833	3e-088
P47192 Vesicle-associated membrane protein 722	829	8e-088
Q9ZTW3 Vesicle-associated membrane protein 721	826	2e-087

TrEMBL top hits (Blast detail)	Score	e value
C6TFA3 Putative uncharacterized protein	1029	9e-110
B7FI15 Putative uncharacterized protein	1012	8e-108
C6T3S1 Putative uncharacterized protein	1009	2e-107
B9RT39 Vesicle-associated membrane protein, putative	1007	3e-107
B9N529 Predicted protein	991	2e-105

Arabidopsis top hits (Blast detail)	Score	e value
AT4G15780.1 ATVAMP724	1106	6e-121
AT2G32670.1 ATVAMP725	834	2e-089
AT1G04760.1 ATVAMP726	833	3e-089
AT2G33120.1 SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1)	829	8e-089
AT1G04750.1 VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)	826	2e-088

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


9	3			43%


12	4			57%

Unigene Members	Member information