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Information for unigene UN10374
| FASTA Sequence |
| Unigene ID: UN10374 | Length: 1617 |
SSR | | TTTTTTCTCTCATTCCTCTTCTTCTAAAAAATCTCAACAGTACCTTTTTGTTTTCTTCCACTATAACTCTGAGAGCTATTGCTATT
GCAGAAAAACAGTGAAAAATAGAGATGAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGGGATCATGCTGATAAGAAGTTAGGCAAAC
CAACTTTCTATTTATGTATAATTAGGTCGATCACATCACCAATTTAACCCTTTTCCACCTCTAAATCTCCTTCACTTCTCCTTCTC
TCCTTCCAAAATTAGGGTTTGTTGCTTCTCTCTTTTATTTATCAATTTTCAAAGACATCCAATCTGGATTCAAGCCAAGAACCCAA
TCTTAGCCACACAATTAAAAGATCTGACTTCTAAAAGATGATGACCACCTTGTCACTTGGAAGAGAAGGAGAAGAAGACAAAGATG
CAGAAGCAAAGAAGCCCATAGAAGAAGTTGAGAGAGAGCACATGTTTGACAAAGTGGTGACTCCAAGCGACGTAGGGAAACTAAAC
AGGCTCGTGATCCCAAAGCAACACGCAGAGAGATACTTCCCTCTAGATTCATCCTCAAACGAGAAAGGTTTGCTTCTAAACTTCGA
AGATCTCACAGGAAAGTCATGGAGGTTCCGTTACTCTTACTGGAACAGTAGCCAGAGCTATGTCATGACCAAAGGTTGGAGCCGTT
TCGTTAAAGACAAGAAACTCGACGCCGGAGATATTGTGTCTTTCCAGAGATGTGTCGGAGACAGCCGCTTGTGTATCGATTGGAGG
AGACGACCTAAAGTCCCTGACTATCCGACATCGACTGCTCACTTTGCTGCAGGAGCTATGTTCCCTAGGTTTTACAGTTTTCCGAC
AGCAACTACTTCGACATGTTACAATCTTTACAATCATCAGCAGCCACGTCATCATCACATTGGTTACGGTTATCCACTGATTCCGA
GAGAATTTGGATATGGATATTTCGTTAGGTCAGTAGACCAGAGAGCGGTGGTGGCTGATCCGCTAGTGATCGAATCTGTGCCGGTG
ATGATGCACGGAGGAGCTCGAGTTAGTCAGGAGGTTGTTGGAACGGCCGGGAAGAGGATGAGGCTTTTTGGAGTTGATATGGAATG
TGGCGAGAGTGGAGTAACCAACAGTACCGAGGAAGAGTCTTCATCTTCCGGTGGGAGTTTGCCGCGTGCCGGAGGTGGCGGTGCTT
CTTCTTCTTCCTCCTTTGTTTCAGCTGAGACTTGGAAGCAGCAGTGAAGATGATCACTTCTCTAAGAAAGGAAAGTCTTCATTGCC
TTTTAATTTGGATCAATAATGATGATGAGATTAGTTGGTACTATAAACTTAAACCACACATAATAATATATATGACAACATAATGC
ATTGGTTTTATTATAAATTTATAGCGAAATGATGTATATGTGTTATAGTGATATACATGCATAGTCCATATAGAGAAATTTTATGG
ATTTGATGAATAGTCTTTTGTCAAGGGTTCCTGAAAAAAATTGTTGATTGGCTATACATATGAAGTACCTCCACCATTTGTTAATC
ATTTTATCATTTTTCAATATATATTATCAATTGATTAAATTATTAAAACTACATTTGGCAAAACATATC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002862757 hypothetical protein ARALYDRAFT_497309 [Arabidopsis lyrata subsp. lyrata] | 1160 | 2e-124 |
| CAZ68123 NGATHA1 [Arabidopsis halleri subsp. halleri] | 1156 | 4e-124 |
| XP_002880271 hypothetical protein ARALYDRAFT_483854 [Arabidopsis lyrata subsp. lyrata] | 1155 | 6e-124 |
| NP_566089 B3 domain-containing transcription factor NGA1 [Arabidopsis thaliana] | 1152 | 1e-123 |
| ACP18971 NGATHA1 [Arabidopsis thaliana] | 1150 | 2e-123 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O82799 B3 domain-containing transcription factor NGA1 | 1152 | 5e-125 |
| Q9M268 B3 domain-containing transcription factor NGA2 | 584 | 4e-059 |
| Q9MAN1 B3 domain-containing transcription factor NGA3 | 502 | 1e-049 |
| Q8LMR9 B3 domain-containing protein Os03g0120900 | 502 | 1e-049 |
| Q6EU30 B3 domain-containing protein Os02g0683500 | 487 | 7e-048 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| D4HU08 NGATHA1 | 1156 | 3e-124 |
| C3VMM2 NGATHA1 | 1150 | 1e-123 |
| B9RMW1 Putative uncharacterized protein | 567 | 6e-056 |
| A5APE8 Putative uncharacterized protein | 548 | 9e-054 |
| B9RYX9 Transcription factor, putative | 528 | 2e-051 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G46870.1 NGA1 (NGATHA1); transcription factor | 1152 | 5e-126 |
| AT3G61970.1 NGA2 (NGATHA2); transcription factor | 584 | 3e-060 |
| AT1G01030.1 NGA3 (NGATHA3); transcription factor | 502 | 1e-050 |
| AT1G68840.1 RAV2 (REGULATOR OF THE ATPASE OF THE VACUOLAR MEMBRANE); DNA binding / transcription factor/ transcription repressor | 410 | 5e-040 |
| AT2G36080.2 DNA-binding protein, putative | 394 | 4e-038 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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