RadishBase

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Information for unigene UN10376

FASTA Sequence

Unigene ID: UN10376	Length: 740		SNP
CTCAATTCAGCTTTCCTCAGGGGTTTTTATTAACGGGCAATAATATTTGAAGCAAACACAAACGGAGTGAAAAGGCGTCTCTTAGA TAAGAGTAGTGACTAAGAGTTTAAACAAATCCTAATTAGGTTTTGGTACAAACACCAGACTCGATTTAATTTTTAAAACAACAAAC GGAAGTCCAAAACAAACAGAGAGATCAATTCTTCTTTTCACAAGAAGCTCCTCTGTTTAGTAACCACCACCATCACCACCTCCACC GTAGCCACCACCACCTCCACCGTAGCCACCACCACCACCGTAGCCACCACCACCTCCATAAGCCCTTGGAGCACTTGTTCTATCGT TGGCAACATTCACTCGGATGTTGCGTCCATTCAGTTCCTTTCCGTCCATCTCAGAAATGGCAGCATTAGCAGCACTCTCATCAGAG AAATTGACAAATCCAAAACCCCTTGACCTTCCAGTTTCTCTATCAACGATGACCTTAGAATCGATCACTTCACCAAAGTTGGAAAA AGCCTCCCTCAATGACTGGTCGTCAGTACCCCACGAGAGACCACCGACGAAGAGCTTGGTAGACATGTACCGGAGAGAACCGAGCA TAGACTGAACTGGAACATTACCGGTCTGAGAAACCGAACCTTGCCTCAATAGACCACCGAGACTTTTGCGGAAAGCCATTTCTGGG GAGTAAAGCTTCGAAACTAGGGTTCTGGTAAACTGAGAGAGAGGCAGATCCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_849377 glycine-rich RNA-binding protein 2 [Arabidopsis thaliana]	641	7e-065
XP_002870351 hypothetical protein ARALYDRAFT_493528 [Arabidopsis lyrata subsp. lyrata]	631	1e-063
NP_193121 glycine-rich RNA-binding protein 2 [Arabidopsis thaliana]	627	3e-063
CAA05727 AtGRP2 [Arabidopsis thaliana]	625	5e-063
NP_001078385 glycine-rich RNA-binding protein 2 [Arabidopsis thaliana]	590	5e-059

Swiss-Prot top hits (Blast detail)	Score	e value
Q9SVM8 Glycine-rich RNA-binding protein 2, mitochondrial	627	1e-064
P49310 Glycine-rich RNA-binding protein GRP1A	382	3e-036
P49311 Glycine-rich RNA-binding protein GRP2A	380	6e-036
Q99070 Glycine-rich RNA-binding protein 2	377	1e-035
Q05966 Glycine-rich RNA-binding protein 10	373	4e-035

TrEMBL top hits (Blast detail)	Score	e value
Q3EA40 Putative uncharacterized protein At4g13850.2	641	5e-065
A8MSB9 Uncharacterized protein At4g13850.3	590	4e-059
Q9LIS2 AT3g23830/F14O13_2	496	3e-048
Q8LDS0 Glycine-rich RNA binding protein, putative	491	1e-047
A8MRQ4 Uncharacterized protein At4g13850.4	489	2e-047

Arabidopsis top hits (Blast detail)	Score	e value
AT4G13850.2 GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2); ATP binding / RNA binding / double-stranded DNA binding / single-stranded DNA binding	641	3e-067
AT4G13850.1 GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2); ATP binding / RNA binding / double-stranded DNA binding / single-stranded DNA binding	627	1e-065
AT4G13850.3 GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2); ATP binding / RNA binding / double-stranded DNA binding / single-stranded DNA binding	590	2e-061
AT3G23830.1 GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4); RNA binding / double-stranded DNA binding / single-stranded DNA binding	496	2e-050
AT3G23830.2 GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4); RNA binding / double-stranded DNA binding / single-stranded DNA binding	496	2e-050

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	10			63%


11	2			13%


9	2			13%


8	2			13%

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