RadishBase

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Information for unigene UN10387

FASTA Sequence

Unigene ID: UN10387	Length: 1315	SSR
GGGTGCCTCTTGTTAAGCTCCACTTCCCCACTACTCTCTCTCTCTCTCTCTCTCTCTCTGCATCTCATCTCCGTTGGGTTTCACAA TGTCGAAATCTGGGGCTATGGATCTCGCCTCCAACCTTGGTGGAAAGATCGATAAATCCGATGTTCTCTCCGCCGTCGAAAGGTAT GAGCAATATCATGTCTTCCACGGAGGTGACGAGGAAGAGAGGAAAGCTAATTACACTGACATGGTTAATGAGTATTATGACCTTGC TACTAGCTTTTATGAGTACGGTTGGGGAGAGTCCTTCCATTTTGCGCACAGATGGAATGGAGAATCACTTCGAGAGAGTATCAAAC GTCACGAGCACTTTCTTGCTCTTCAGCTTGGCGTTAAACCTGGACAAAAGGTACTGGATGTAGGATGTGGAATTGGTGGACCACTG AGAGAAATTGCACGATTCAGCAATTCATCTGTTACCGGGATCAACAATAATGAATACCAGATCACCAGAGGCAAGGAACTAAACCG ACTTGCAGGTGTCGATAAGACATGTGGCTTTGTCAAGGCTGACTTCATGAAGATGCCATTCCCTGAAAACACTTTTGATGCAGTTT ATGCTATAGAGGCAACCTGCCACGCACCTGATGCATATGGATGCTACAAAGAGATCTACAGGGTGCTAAAGCCTGGGCAATGTTTT GCTGCCTATGAGTGGTGCATGACTGATGCGTTTGACCCTGATAACGCCCAACATCAGAAGATAAAGGCAGAGATAGAGATTGGAGA TGGTCTCCCTGACATTAGGCTGACTTCAAAGTGCCTAGAAGCTCTGAAGCAGGCCGGTTTTGAAGTAATATGGGAAAAGGATCTGG CCAAGGACTCGCCAGTCCCATGGTACTTACCTCTAGACAAAAACCACTTTTCGCTCAGTAGCTTCCGCCTAACAGCTGTTGGACGA TCCATAACCAAAAACATGGTGAAGCTCCTTGAGTACATAAGACTGGCACCTAAAGGAAGCCAAAGGGTTTCAGATTTTCTGGAGAA GGCCGCGGAAGGATTAGTCGACGGTGGAAGGAGAGAGATATTCACGCCAATGTATTTTTTCTTGGCCCGGAAGCCAGAATGAGTGT GATGATAGATTGATGATCATCGTAGGTCGAGTGAAGTTGACAGATTTTTTCAACTTGCTATTTGTTTGTTCTGTTTCATCTCCTTT TGTTGCAGTGTTCCTTAACAAAGAAACCTTTGTTGCAACTTGTTTTGGATAAGTCTTAACATGTCACGTGCTGCAGCTCTCTGTCA GTGAATAACGTCAAAATATCTTGGA

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002873624 cephalopod [Arabidopsis lyrata subsp. lyrata]	1725	3e-190
AAM53553 cephalopod [Arabidopsis thaliana]	1717	3e-189
NP_196875 cycloartenol-c-24-methyltransferase [Arabidopsis thaliana]	1715	5e-189
AAB04057 S-adenosyl-L-methionine:delta24-sterol-C-methyltransferase [Glycine max]	1612	4e-177
AAZ83345 24-sterol C-methyltransferase [Gossypium hirsutum]	1609	1e-176

Swiss-Prot top hits (Blast detail)	Score	e value
Q9LM02 Cycloartenol-C-24-methyltransferase	1715	2e-190
Q6ZIX2 Cycloartenol-C-24-methyltransferase 1	1514	4e-167
Q54I98 Probable cycloartenol-C-24-methyltransferase 1	896	2e-095
Q759S7 Sterol 24-C-methyltransferase	836	2e-088
Q6CYB3 Sterol 24-C-methyltransferase	824	4e-087

TrEMBL top hits (Blast detail)	Score	e value
Q43445 S-adenosyl-L-methionine:delta24-sterol-C-methyltransferase	1612	3e-177
Q2QDF7 24-sterol C-methyltransferase	1609	7e-177
C6TI82 Putative uncharacterized protein	1604	3e-176
C6TAL0 Putative uncharacterized protein	1593	5e-175
B7FHU0 Putative uncharacterized protein	1580	2e-173

Arabidopsis top hits (Blast detail)	Score	e value
AT5G13710.1 SMT1 (STEROL METHYLTRANSFERASE 1); sterol 24-C-methyltransferase	1716	1e-191
AT5G13710.2 SMT1 (STEROL METHYLTRANSFERASE 1); sterol 24-C-methyltransferase	1716	1e-191
AT1G20330.1 SMT2 (STEROL METHYLTRANSFERASE 2); S-adenosylmethionine-dependent methyltransferase	645	2e-067
AT1G76090.1 SMT3 (STEROL METHYLTRANSFERASE 3); S-adenosylmethionine-dependent methyltransferase/ sterol 24-C-methyltransferase	595	1e-061
AT1G73600.2 methyltransferase/ phosphoethanolamine N-methyltransferase	185	5e-014

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


7	1			25%


8	2			50%


12	1			25%

Unigene Members	Member information