RadishBase

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Information for unigene UN10396

FASTA Sequence

Unigene ID: UN10396	Length: 1235		SNP
GGTGCTTTAATGTACATATTAAAAAAACAAAAACTGTGAAAACTTAGACATGGACATAATTTCCTCACTTTTTCTAGTGAAAATTA TATTTATTTTGAACACTCAAGGTTCTTAATTCGTCAAAGAGAGTGCAAAACCAAAAATGCATGGTCTCAATTCAACAACAACAAAG CAAACTAAGTGTATGACATCAAGCATTCGAAGTTATGCAGTAGTACTATGTTGTAGAACGTCAAATAACTGAAAAACATGATCAAG AAAGACAATAAAATAAAAAAAAATACACATTTTTCCGAGCAACGACACTTGCTGTCTTCGGATGCATCAAAGGTCGTTTCTCTTCA CACAGAGGATTCAGTTCTCTTCTTTCGGCTCATCACCTTTGGATTTCTCTTCTCCTTCCTCCGGGAGGTCAGAAGTCCACAGGGTG AGATTGTCTCTAAGAAGCTGCATGATAAGAGTGCTGTCCTTGTATGACTCCTCGTTGAGGCTGTCAAGTTCAGCGATTGCATCGTC AAATGCTTGCTTAGCCAATTGGCATGCGCTTTCAGGAGAGTTTAAGATCTCGTAGTAGAAAACAGAAAAGTTCAAAGCCAAGCCAA GTCTAACTGGATGTGTGGGTGCCAAACCAGTGTCTGCAGCAGCAACAGCAGCCTTGTATGCTTCAAGAGACTGATCTGCAGCTTCC TTGCGTTCAGTACCAGAACTGAACTCTGCCAGATAGCGATAGTAATCTCCTTTCATTTTGTAGAAAAAGACGGTGGACTCAACAGC GGTAGAGGAAGGAATGAGGTGCTTGTCAATGACAGACAAGATGTCATTACAAACTTTGGCAAGCTCGTCTTCAACCCTCTTTCGGT AAGTCTGAATCCTCTTGACATTCTCCTCGTTCCCCTTGGACTCTTCCTTCTGCTCGATGGAGGATAGTATCCTCCACGAAGCTCTC CTTGCGCCAATGACGTTCTTGTAACCCACAGATACGAGGTTTCTCTCCTCCACGGTGAGCTCCACATCCATCTCTGCTACTTTCTT CATTGCCTCAACCATCTCATCGTATCGTTCGGTTTGCTCGGAGAGCTTCGCCGAGTAAACCTGCTTTTCCCTCTCAGTCTCCATGC CTTCTTTCTTCTCTCTGTCTGAAACAAACAATGGATGCTCTCTCTATTTTGATCTCGAGATTAGTGGTAACCCTAGAATGGCTCTG ATGCTAAATATACCGGCCCCGTTGGATCTCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
ACN73532 1433-1 [Brassica napus]	1244	2e-134
ADO95305 14-3-3-like protein GF14 Epsilon [Eutrema salsugineum]	1217	3e-131
XP_002893217 hypothetical protein ARALYDRAFT_313117 [Arabidopsis lyrata subsp. lyrata]	1203	1e-129
NP_564167 14-3-3-like protein GF14 epsilon [Arabidopsis thaliana]	1185	1e-127
NP_849698 14-3-3-like protein GF14 epsilon [Arabidopsis thaliana]	1179	7e-127

Swiss-Prot top hits (Blast detail)	Score	e value
P48347 14-3-3-like protein GF14 epsilon	1185	6e-129
P93212 14-3-3 protein 7	1059	2e-114
Q9S9Z8 14-3-3-like protein GF14 omicron	991	2e-106
Q96453 14-3-3-like protein D	989	3e-106
P93214 14-3-3 protein 9	987	5e-106

TrEMBL top hits (Blast detail)	Score	e value
C0KJK4 1433-1	1244	1e-134
B9DFR1 AT1G22300 protein	1179	4e-127
Q3ED73 Putative uncharacterized protein At1g22300.3	1144	5e-123
B9RJK9 14-3-3 protein, putative	1095	2e-117
A1XJ43 14-3-3-like protein	1080	1e-115

Arabidopsis top hits (Blast detail)	Score	e value
AT1G22300.1 GRF10 (GENERAL REGULATORY FACTOR 10); ATP binding / protein binding / protein phosphorylated amino acid binding	1186	4e-130
AT1G22300.2 GRF10 (GENERAL REGULATORY FACTOR 10); ATP binding / protein binding / protein phosphorylated amino acid binding	1179	2e-129
AT1G22300.3 GRF10 (GENERAL REGULATORY FACTOR 10); ATP binding / protein binding / protein phosphorylated amino acid binding	1144	3e-125
AT1G34760.2 GRF11 (GENERAL REGULATORY FACTOR 11); ATPase binding / amino acid binding / protein binding / protein phosphorylated amino acid binding	1017	2e-110
AT1G34760.1 GRF11 (GENERAL REGULATORY FACTOR 11); ATPase binding / amino acid binding / protein binding / protein phosphorylated amino acid binding	1011	7e-110

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


9	14			33%


6	13			30%


11	9			21%


8	4			9%


20	1			2%


12	2			5%

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