Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN10448

FASTA Sequence
Unigene ID: UN10448Length: 1495  SNP
GGGTATACAAAGTCAACAGATCGTAATGAATACAAAATAAGATTTATGGCTACACAAACTGTTGAAGATAGTTCTAGATCTGGTCC
AAGAAGCACTACTGTAGGGAAGTTATTGAAACCGTTGAATTCTGAATATGGTAAAGTAGCTCCTGTATGGGGAACGACCCCTTTGA
TGGGTGTTGCAATGGCGCTATTTGCGGTATTCCTATCTATTATTTTGGAGATTTATAATTCTTCTGTTCTACTGGATGGAATTTCA
GTGAATTAGACTGAGAAGAATCTTGAAGTCCTAGCTTTTTGTTCGATACAAAAAAGTAAAGTATGTAGGTCTAAAATTTTTAGCCT
GTTCTCCTTTGGTAGTTTGACCGCGAAATTTTTTTTCTGCATTGTATATTTCCGGAATATGAGTAAAGTTTATGATTGGTTCGAAG
AACGTCTTGAGATTCAAGCGATTGCAGACGATATAACTAGTAAATATGTTCCTCCGCATGTCAACATATTTTATTGTCTAGGAGGA
ATTACCCTTACTTGTTTTTTAGTACAAGTAGCTACGGGATTTGCTATGACTTTTTATTACCGTCCAACTGTTACTGAGGCTTTTGC
TTCTGTTCAATATATAATGACTGAAGCTAACTTTGGTTGGTTAATCCGATCAGTTCATCGATGGTCGGCAAGTATGATGGTCCTAA
TGATGATCCTGCACGTATTTCGTGTATACCTCACCGGTGGTTTTAAAAAACCTCGCGAATTAACTTGGGTTACTGGTGTGGTTCTG
GGTGTATTGACCGCATCTTTTGGTGTAACAGGTTATTCTTTACCTTGGGATCAAATTGGCTATTGGGCAGTCAAAATTGTAACAGG
TGTACCTGACGCTATTCCGGTAATAGGATCGCCTCTTGTAGAATTATTACGCGGAAGTGCTAGTGTTGGACAATCCACTTTGACTC
GTTTTTATAGTTTACACACTTTTGTATTACCTCTTCTTACGGCTGTATTTATGTTAATGCATTTCTTAATGATACGTAAGCAAGGT
ATTTCTGGTCCCTTATAAATAATATAGATTCTAGATTTTTTTAATTACTAATTTATTTTATTACTTGGTGAAGGAACAATCGTATT
TTATTGCTATAAATATGGATTATTAAAAAAATAAGACATGTATTTGGATATTTCCCTTCAACTCCACAATATTGTATTATTTTTTT
GACATAAAAAGTTGGAGGGAATTCTATGAAGAGAAAATGGTTATGAGAGATGATATGGTTAAAGTGATTGCTTGGTATGATAACGA
ATGGGGTTACTCGCAGAGAGTCGTTGATTTGGCTGACATTGTTGCCAATAACTGGAAGTGAAAAAGACTCAACTGTTTGATGTTGT
TCTGCTCCATTTTTTATTTTACTGTTATTATTATGATTCGGAATGTATAATTGTAGTTCCTGAGTTTATATGTATTTGTGCTCTTC
AAAATTTAATAGTAATAAACTCTATATTCGGAC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_051088 cytochrome b6 [Arabidopsis thaliana]11242e-120
YP_001122976 cytochrome B6 [Aethionema cordifolium]11233e-120
YP_001123492 cytochrome b6 [Crucihimalaya wallichii]11206e-120
XP_002888340 predicted protein [Arabidopsis lyrata subsp. lyrata]11198e-120
NP_084723 cytochrome b6 [Oenothera elata subsp. hookeri]11181e-119

Swiss-Prot top hits (Blast detail)Scoree value
P56773 Cytochrome b611249e-122
Q9MTJ5 Cytochrome b611184e-121
P00165 Cytochrome b611176e-121
P06247 Cytochrome b611176e-121
P60161 Cytochrome b611159e-121

TrEMBL top hits (Blast detail)Scoree value
A4QJW1 Cytochrome b611241e-120
A4QK48 Cytochrome b611241e-120
A4QKD5 Cytochrome b611241e-120
A4QKM2 Cytochrome b611241e-120
A4QL49 Cytochrome b611241e-120

Arabidopsis top hits (Blast detail)Scoree value
ATCG00720.1 Encodes the cytochrome b(6) subunit of the cytochrome b6f complex.11256e-123
ATCG00710.1 Encodes a 8 kD phosphoprotein that is a component of the photosystem II oxygen evolving core. Its exact molecular function has not been determined but it may play a role in mediating electron transfer between the secondary quinone acceptors, QA and QB, associated with the acceptor side of PSII.3551e-033
AT2G07727.1 cytochrome b (MTCYB) (COB) (CYTB)3532e-033
ATMG00220.1 Mitochondrial apocytochrome b (cob) gene encodes a subunit of the ubiquinol-cytochrome c oxidoreductase and is part of a 5 kb transcript. The transcript also contains a pseudogene for ribosomal protein S14 called RPS15 and a tRNA(Ser) gene. Both the Cob and RPS15 genes are edited in the transcript.3532e-033
AT1G12900.1 GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2); NAD or NADH binding / binding / catalytic/ glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)/ glyceraldehyde-3-phosphate dehydrogenase1929e-015

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
71  11%
 
113  33%
 
103  33%
 
82  22%

Unigene MembersMember information