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Information for unigene UN10510
| FASTA Sequence |
| Unigene ID: UN10510 | Length: 1524 |
| SNP | GCCTCCTTTCTTCCGTGATTAACTGTTGGCACCAGTCCTACATTTTGTCTCTGTGGACCGAGAAGAAAGGACTCACTGCGCCAAGA
TCACTAACTAATACTAATCTAATAGAATAGAAAATCCTAATATAGGGAGAAAAGAACTGTCTTTTCTGTATACTTATGTATACTTT
CCCCGGTTCCGTTGCTACTGCGGGCTTTACGCAATCGATCGGATCATCTAGATATCCCTTCAACACAACACAACATAGGTCGTCGA
AAGGATCTCGGAGACCCGCCAAAGCACGAAAGCCAGGATCTTTCAGAAAATGAATTCCTATTCGAAGAGTGCATAACCGCATGGAT
AAGCTCACACTAACCCGTCAATTTGGGATCCAATTCGGGATTTTCCTTGAGGGATATTGGTAAGGAATTGGAATGTAATAATATCG
ATTCATAATGGATTCATATCGATACAGAAGAAAAGGTTCTCTATCGATTCAACAAGTGCTGTACTTATGGGAAAGCGATAGAGAAA
GAGAAAAAAAAAACGAAGATTTCACATAGTGATTTTTTTTTTGATCAAAAAAAAATATGATTGAATTTATTTCGTACCCTTCGCTC
AATGAGAACATGGGTCAGATTCTATAGGATCAAACCTATGGGACTTAAGAATGATGGAAGGGAATAAAATAAAAAAAGAAATCAAA
TAAAGAAAAGAGAGGGAAAATAAAGAAATAATAAGTAAATAAAAATGAAGTAGAAGAACCCAGATTCCAAATGAACAAATTCAAAC
TTGAAAAAGTCTCTTTCTGATTCTCGAAGAATGAGGGGCAAAGAGATTGATCGAGAAAGATCTCTTGTTCTTATTATAAGATCGTG
TGATTGGACCCGCAGATGTTTGGTAAAAATCTTATCCTTTGAGAATAATCAAAAATAGAAAGTGTTCAATTGGAACATGAAAACGT
GACCGAGTTTATCCTAGTTACTCTTCGGGACGGAGTGGAAGAAGGGAGGAGATTCGCGAACGAGGAAAGGGACCCAATGACTTCGA
AAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCATGTCCGGTTCTGTAGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTT
TCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGATTAACCTCGGGATTTGAAATCACTGCTTA
TATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGAGAAGGGTTAAGGATTTACCCGGTGTGAGAT
ATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAAATATGGGGTCAAAAGCCAAAAT
AAAAGATTGAGCCCTTATAAAAGAAACAGATTCTTGAACCCTTTCACGCTCATGTCACGTCGAGGTACTGCAGAGAAAAACTGCAA
ATCCGATCCAATTATCGTATCGATAGTTAACATGTTGGTTACCGTATCTGAACACGGAAAAA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| A4GYN8 RecName: Full=30S ribosomal protein S12-B, chloroplastic | 463 | 9e-044 |
| YP_001123094 ribosomal protein S12 [Olimarabidopsis pumila] | 419 | 1e-038 |
| ADZ52343 ribosomal protein S12 [Asclepias syriaca] | 414 | 4e-038 |
| YP_001531237 ribosomal protein S12 [Cuscuta obtusiflora] | 412 | 8e-038 |
| AAA16344 ribosomal protein S12 [Nicotiana plumbaginifolia] | 411 | 1e-037 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| A4GYN8 30S ribosomal protein S12-B, chloroplastic | 463 | 4e-045 |
| A4QJX7 30S ribosomal protein S12-B, chloroplastic | 419 | 5e-040 |
| A4QJV5 30S ribosomal protein S12-A, chloroplastic | 411 | 4e-039 |
| Q3V510 30S ribosomal protein S12, chloroplastic | 411 | 4e-039 |
| A4QJD9 30S ribosomal protein S12, chloroplastic | 411 | 4e-039 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A8W3K7 Ribosomal protein S12 | 412 | 5e-038 |
| A7M921 Ribosomal protein S12 | 411 | 7e-038 |
| A7Y392 Ribosomal protein S12 | 411 | 7e-038 |
| A8W3A4 Ribosomal protein S12 | 411 | 7e-038 |
| A8W3H1 Ribosomal protein S12 | 411 | 7e-038 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| ATCG00065.1 chloroplast gene encoding ribosomal protein s12. The gene is located in three distinct loci on the chloroplast genome and is transpliced to make one transcript. | 411 | 4e-040 |
| ATCG01230.1 chloroplast gene encoding ribosomal protein s12. The gene is located in three distinct loci on the chloroplast genome and is transpliced to make one transcript. | 411 | 4e-040 |
| ATCG00905.1 chloroplast gene encoding ribosomal protein s12. The gene is located in three distinct loci on the chloroplast genome and is transpliced to make one transcript. | 411 | 4e-040 |
| AT2G07675.1 ribosomal protein S12 mitochondrial family protein | 269 | 1e-023 |
| ATMG00980.1 ribosomal protein L2 | 269 | 1e-023 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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