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Information for unigene UN10564
| FASTA Sequence |
| Unigene ID: UN10564 | Length: 1356 |
SSR | SNP | GGAAGAGAAAGAAGAAAAAAAAAAGCTAGAAGAACTCAAAAGATGTATAATCAAGAACAACATCCTGTCGGTGCTCCTCCTCCCCA
AGGGTATCCTCCTAAGGACGGTTATCCTCCAGCTGGCTATCCTGCCGCCGGTTATCCACCGCCGGGATATGGTCAGGGATACCCTG
CTCAAGGTTATCCTCCACCTCAATACTCTCAAGCTCCGCAGCAAAAGCAACAAGCTGGTATGCTCGAAGGATGTTTGGCTGCGCTC
TGCTGTTGCTGTCTCTTGGATGCTTGTTTCTGATCGGTGAATATATCAGTTCAACGATTTCTTTTCCTCTGCATGCAATGAAAAAG
ACATGTGTATCGTTCAACAATCTGCTGTTAATCTTCTTTCTTTTCGTATTTGTCTTTTAAACTTTTGTATTTTATGGATTATTTAC
TCGACTATGACGACGTCACTTTCTCTACCATTTACACAATAAAAACTATTTTTTTTGAATGAACACAATAAAAACTATTGAGAAGT
AGATCGAGTAAAATTAACCATAAAAGCTTGATGAAATACCCAAGGAGGTGTGTTTGTCATCATCATCATCATCATATTATTGTGTC
GTAGTAAAGGGAAAATAGGAAAAAAATAAAAGTAAAATCCAACCATGGATATAATTCAGTGAAAAAGCTCACAGATGCTAAAATAA
CGAATAAAAATGAGAGCCTTCACAGCGAAGTGTCTCCTTTTGGCCGAGAGATGGACGAAGATGATGTAGTGATCAGTTCTGTGGTT
GAGGCTTGCCTTTCCACTTGAAGTTGTCAGAGTAAGACTTAGCCTTCAACAACGGTGTTTTGGGCTCCTTGACCACATAATCCCAG
CCATGACGCTGAGCAAAAGACTTGGCAGCTTCCTCGGAATCAAAACCAAGAGCGGAGTCACCAACATTGGCATAAGGGTCACCCGT
AGAAGTCCACCCCATCAATGGGTTCTCCCACTTGAGGGTGGAGACGAAATTGATCTTCCATTTCCCAAGTTTTCCAGATCCTTGCT
GTGTCGCCGTTCTTGCAGGTGAGTATATTATCACCTTTCGTGCAAGATGCTCCTCTGGGATTCCGGAGACACTACCGATCTCACCG
CGCTTGTAATCCGACGACTCCACCACCGCGTCACTTGAGAAAGGCCGAGCTACACGTCCGAGATTCGCCGCGATACGAGCAGTCGC
TTGAGTAGTAGCACGAAGCGCCATCGTCACGTAGAAAGTTTGGAAATCTGGGAAATAATCTCTTTGGAGCTTTTAAGTTTTTCCTC
TCCTGTCCTGTCTCGAGAGAGATTTGTAAGAACAAAATGGGCAAGAGAGAAGTGGGGAAAAGTTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| ABK78688 NADH-ubiquinone oxidoreductase related-like protein [Brassica rapa] | 727 | 2e-074 |
| XP_002866696 hypothetical protein ARALYDRAFT_358798 [Arabidopsis lyrata subsp. lyrata] | 721 | 1e-073 |
| AAM63888 unknown [Arabidopsis thaliana] | 715 | 5e-073 |
| NP_201560 NADH dehydrogenase (ubiquinone) Fe-S protein 4 [Arabidopsis thaliana] | 707 | 4e-072 |
| XP_002265704 PREDICTED: hypothetical protein [Vitis vinifera] | 561 | 3e-055 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8S8M0 UPF0467 protein At2g41420 | 301 | 2e-026 |
| Q0MQH0 NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial | 282 | 3e-024 |
| O43181 NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial | 282 | 3e-024 |
| P0CB95 NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial | 280 | 6e-024 |
| P0CB96 NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial | 280 | 6e-024 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A0T2P1 NADH-ubiquinone oxidoreductase related-like protein | 727 | 1e-074 |
| Q8LC28 Putative uncharacterized protein | 715 | 3e-073 |
| Q9FJW4 At5g67590 | 707 | 3e-072 |
| A5C501 Putative uncharacterized protein | 561 | 2e-055 |
| A9PDQ9 Predicted protein | 557 | 7e-055 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G67590.1 FRO1 (FROSTBITE1); NADH dehydrogenase (ubiquinone) | 713 | 3e-075 |
| AT5G67600.1 unknown protein | 467 | 1e-046 |
| AT2G41420.1 proline-rich family protein | 302 | 1e-027 |
| AT3G49845.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: XYPPX repeat (InterPro:IPR006031); Has 14038 Blast hits to 7746 proteins in 541 species: Archae - 8; Bacteria - 1083; Metazoa - 5225; Fungi - 1793; Plants - 3748; Viruses - 424; Other Eukaryotes - 1757 (source: NCBI BLink). | 246 | 4e-021 |
| AT5G17650.1 glycine/proline-rich protein | 164 | 1e-011 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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