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Information for unigene UN10566
| FASTA Sequence |
| Unigene ID: UN10566 | Length: 2319 |
SSR | | GCATCGGGGGATTCTCACATAGATCTCCAACGATCAGGAAGTTGGGCCCATGAACGTGATGAAGGAGAAGAACAGGTTTTGCAACC
TACAATAAAGCGGAAGCGGAGTATTCGTCTAAGACCCCGTCAAACAGCAGAAAGAATAGACGGTATTGATATGCCTGCATCTCAGC
CATTGCAAGTCGATCGTAGCTATCGATTAAAATTGAGGACAGTTGTTGACTCGCATGGTTCAAGACAAGAACAGAGTGATTCGTCC
TCGAGACTTAGGAGTTTACCTGGAAAGAAAGTAGCTAATACTTCCAAGCTGCATGTATCATCACCAAAATCTGGTAGATTAAATGC
CACCCAGGAGGACAACACTGAAGCTGCTAGAGAAACATGGGACGGAACTAGTCCTATTGGCTCTTCAAGTGCAGGTGCAAGAATGT
CCCACAACATACAGAAACGGTGCAAAACGGTCATTAGCAAACTCCAAAGGAGAATCGATAAGGAAGGTCAGCAGATTGTGCCTATG
CTGACAAATTTGTGGAAGAGAATCCAGACTGGTTATGCAGCTGGAGGTGTAAATAATCTATTGGAACTGCGAGAGATTGATCACCG
GTTAGAAAGGCTAGAGTACGCAGGGGTTATGGAACTCGCATCTGACGTGCAGTATATGCTAAGGGGAGCAATGCAATTCTATGGAT
TCTCACACGAGGTGAGATCTGAAGCAAAGAAGGTTCACAGTCTGTTCTTTGATCTACTGAAGATGTCTTTTCCGGACACAGATTTC
CGAGAAGCAAGGAATGCTCTTTCCTTCTCTGGCCCAACCCCGACTTTGGTATCCACACTATCCCCAAGAGCAGCAGGTAGTAGTCA
GGGTAAGAAACAAAGCTCGGCGGGACATCAAGCCACACCGATGACTCTCCAATTTTAACTCATCCAGGGGAACTAATAATCTGCAA
GAAGAAGAGGAAAGACAGAGAAAAGTCTGCTCCAAGAACCCGAACCGCTGGCTCAAGCAGCCCGGTCTCACCCCCAGCTATGGTAG
GTCGTGGTCTTAGAAGTCCTGTGTCTGGTTCAGGTACAAGGGAAACAAGGCTAGCTCAGCAGCAACGATGGCCAAACCAAAGCACA
CATCCAAACAACAGCGGTACGGCTGGTGATTCAGTGGGATGGGCTAATCCTGTGAAGAGGTTAAGAACCGATGCTGGTAGAAGAAG
GCCGAGCCATTTGTAAACAGATTGAGCCTCTTTTTATCCTTTTAGTGCTTACAGGTGGTGGGTGATATGCAATGTGGCAATTGAAA
GCAATCTAGCAGCGAGTCTTGGACTTACCTTAGTAAAACAAATAATAGTATTCTCCCTTCTTGGTATGTTGCTATTTAGAAGAATA
TGTCCTTTTGTCCGCAGTATCCTCCCATCTTTAGATATGTTCTTTGTATAAAAAAGAACGTTATTGGAGAGATGAATTCATGTTTT
ATTGTAGTAAGGTTGCAAATTGTTATATGTTATTTACATTTGAAGCAAATGAAAGTTTCAATGATCCTAAAAGAATTAACACAAGT
CTTTACACATTTACAGAGGAAAGTTCTTACTCCTCCCATGCAATGAACATCAATGGTTTATATTTTTGGAAATGGACTAATAAATC
AAAGTACAAAGAGAGATTTGATTTGTGACGAAGTCATCAAGGATCAGCTTTTCCAGCAATTTCATCGTTGTCATCAGAGTCTGAAC
CACGTTCGCTCATGCTATCATCATCATCATCGTCATCATCACTTGAGATCTCCTCAGGTGCTCCTATATCCTCTGGTTTAGCATAT
CTCTTGCAATATTCTTTGACTTTGAGCTCATAGGCAGGGCGGTCTCGCATCAAGAGAGAGGCAGCTTCACCATTGAAAGGATCAGA
TGGGTTTGGATATAGAAGCAATTGAGGAAGGAATGACTCGAAGACATTGATAAGATCAAACATTGGACTCCATGTCTGGTTTATTA
CATCTAAGCAAACTGCGCCAGAAGATTCATCAACATTGGGGTGATAAATCTTGTTAACGAAACCAACAGAAGGAGATTTGTAAGGA
TAAGCATCAGGAAGTTCGACTTTGATCTTCCATACACCTCCTTCATAAAGACTGTCAGTGGGGCCATGGAAAGTGACGTAGAACAT
ATGCAAATCGTCGTTGATTGTATCGACCTTGTAATCACTCATCATCAATTTCATCATGTCCATCTCTCGGCGTTTGCTCGGCGAAG
CCATCTTCTTCTTTCTTCTTCTGGTTTGATAGAGAGAGAGAAGAAGAAAATAAAATTATTGCCTAGAGAAAATGAAACTATCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002880213 ATBRM/CHR2 [Arabidopsis lyrata subsp. lyrata] | 1321 | 5e-143 |
| NP_973695 ATP-dependent helicase BRM [Arabidopsis thaliana] | 1301 | 1e-140 |
| NP_182126 ATP-dependent helicase BRM [Arabidopsis thaliana] | 1301 | 1e-140 |
| AAC62900 putative SNF2 subfamily transcriptional activator [Arabidopsis thaliana] | 1301 | 1e-140 |
| XP_002882046 ubiquitin-conjugating enzyme 6 [Arabidopsis lyrata subsp. lyrata] | 885 | 2e-092 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q6EVK6 ATP-dependent helicase BRM | 1317 | 6e-144 |
| P42750 Ubiquitin-conjugating enzyme E2 6 | 841 | 9e-089 |
| P42748 Ubiquitin-conjugating enzyme E2 4 | 749 | 4e-078 |
| P42749 Ubiquitin-conjugating enzyme E2 5 | 731 | 5e-076 |
| P16577 Ubiquitin-conjugating enzyme E2-23 kDa | 726 | 2e-075 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9RDU4 Ubiquitin carrier protein | 742 | 5e-076 |
| A5B1R0 Ubiquitin carrier protein | 739 | 1e-075 |
| B8BH65 Ubiquitin carrier protein | 739 | 1e-075 |
| Q337R4 Ubiquitin carrier protein | 739 | 1e-075 |
| B4FFL4 Ubiquitin carrier protein | 737 | 2e-075 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G46020.2 transcription regulatory protein SNF2, putative | 1317 | 5e-145 |
| AT2G46020.1 transcription regulatory protein SNF2, putative | 1317 | 5e-145 |
| AT2G46030.1 UBC6 (ubiquitin-conjugating enzyme 6); ubiquitin-protein ligase | 847 | 2e-090 |
| AT5G41340.1 UBC4 (UBIQUITIN CONJUGATING ENZYME 4); ubiquitin-protein ligase | 756 | 6e-080 |
| AT1G63800.1 UBC5 (ubiquitin-conjugating enzyme 5); ubiquitin-protein ligase | 731 | 5e-077 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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