RadishBase

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Information for unigene UN10585

FASTA Sequence

Unigene ID: UN10585	Length: 1104		SNP
GTCAAATGAAATATGATTCATTCTTTTATTAATTGTTCCGAATGGATAATACAGCTATCCTTATACATGATTTATGATGATGGTAA GTTTAGATAAAGATCGGTTGCTTGATCTTCACGTTGCAACTCGGAAGAGGTGCACCACACAAGCACTTGTTGTGTAAATAGGCATA AGCATCAAAACTCTGAAGGTCACCTCCCTGGGGAATGCGTCCACACAATCTGTTATAGCTAACGTTGAAAGTCTGAAGATCAAGTT GGGTCCATTGATCCGGGATACTCCCTGTGAGGCTGTTGTGATTCAAGTCCAAGAAACGAACTGTCATAGCGACCTTAACCTTGGAG ATATCGAACTGGAACATGTTTCTAGATAAGTCGATGTGCCATGTCTTCTTTTTGGCTCCAAACAACATCGACGCATCACCTTCAAG CTTGTTCCGGGAAAGATCAATCGTGTTAAAGTCGAGGTTGCCTAGTGATTTTGGTATAGAACCGGACAGCTGGTTGTGTGATAGGT AAATCCCATATACATCTCCTTTAAACGATCCAAATGACTCTGGTATCGTACCTGTAAGCTTGTTCCTGCTGAGTTCTAGTGCAGTC AGATTAGGTAACAAAGAGAGTGAACCGGGTATGGAACCGGAGAGTTTATTGAAGGAAAGGTTTATGTACTCTAGATTCTTGAGTTG ACTCAGAAATTCAGGAACCGGGCCGGTCAGGTTGTTCCAGCTGAGCCAGAGAAATTTGAGATACTTGAGCTTGGCAATGGTGGGTG GGATTTCACCGGTGAGGTTAGGGAGTTTGCGGAGTGTGAGGTATTGTAGATACGGTAAGTCGCCGACTTCAGGAGGGATCTGACCG GAGACGTCGATGTTGGATATGGCTAGAGAGATGACTCGGTTTGCGTTGTCGCAATCAACAGAGTACCAGGTGCAGCAGTCGTCCTC GAGGACCCAGGAGATGTTCATGGCTTTCAGGATCTTGAGGAGGGTGTTTTTGTCATCTTTGTGACAGAGGTCTTTGGATAAAGATG TCGTTAGTAGAAGAGCGAACAAGACCAAGAGCAGTGTCGTTGTTTTACCACCCATAGTGTGTTGTTGTGTTT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
ABX46557 polygalacturonase inhibitor protein 11 [Brassica napus]	1530	1e-167
ACP28178 polygalacturonase-inhibiting protein 1 [Brassica rapa subsp. pekinensis]	1529	1e-167
AAM94867 polygalacturonase inhibitor protein [Brassica napus]	1516	5e-166
ABX46563 polygalacturonase inhibitor protein 17 [Brassica napus]	1454	7e-159
ABX46560 polygalacturonase inhibitor protein 14 [Brassica napus]	1424	2e-155

Swiss-Prot top hits (Blast detail)	Score	e value
Q9M5J9 Polygalacturonase inhibitor 1	1031	3e-111
Q9M5J8 Polygalacturonase inhibitor 2	1028	8e-111
Q05091 Polygalacturonase inhibitor	971	3e-104
A7PW81 Polygalacturonase inhibitor	955	2e-102
P58822 Polygalacturonase inhibitor 2	701	6e-073

TrEMBL top hits (Blast detail)	Score	e value
A9YBZ2 Polygalacturonase inhibitor protein 11	1530	8e-168
C3VX46 Polygalacturonase-inhibiting protein 1	1529	1e-167
Q8L4C1 Polygalacturonase inhibitor protein	1516	3e-166
A9YBZ8 Polygalacturonase inhibitor protein 17	1454	5e-159
A9YBZ5 Polygalacturonase inhibitor protein 14	1424	1e-155

Arabidopsis top hits (Blast detail)	Score	e value
AT5G06860.1 PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1); protein binding	1031	3e-112
AT5G06870.1 PGIP2 (POLYGALACTURONASE INHIBITING PROTEIN 2); protein binding	1028	7e-112
AT3G12145.1 FLR1; enzyme inhibitor/ transcription factor binding	806	4e-086
AT1G35710.1 leucine-rich repeat transmembrane protein kinase, putative	336	1e-031
AT3G12610.1 DRT100 (DNA-DAMAGE REPAIR/TOLERATION 100); nucleotide binding / protein binding	336	1e-031

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


9	7			44%


12	2			13%


7	3			19%


8	4			25%

Unigene Members	Member information