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Information for unigene UN10775
| FASTA Sequence |
| Unigene ID: UN10775 | Length: 1017 |
SSR | | GGGTTATTATTAACTGAAGAACCCAATCTTATCCGAGAAATCAAAAGAGAGAGAGAGAGAGCAGAGGAGAGAAAACACAAACATGG
CGGTTCTCTGTTCGTCTTCAACAGTTATACTCCCTTCGGTGAAACCTTCTGGAAGTAACAGAAGGTCTCCGTTTCTAGGCTTCTTC
TCTCTAACTGCTATCTCGAAGCCGTCGGTGCGAGTCGGCATTTACGCGAACACGAAGAGGGGATTGTAGGTGAAGTGCGAAGCGGA
GGAGCAGGGGACTACTGCTACTACTACTTCCCTTGTTCCGGCGAATCAACGGTGGATGTTCGACGAAGAAGAAGCTAATGGCCCTG
ACATTTGGAACACAACGTGGTGTCCAAAGGCTTCGGACCATGTGAACACGGACAAGCCTTGGTATGTTGTCGATGCAACCGACAAG
ATTCTCGGTAGATTGGCATCCACCATTGCTAATCACATCCGTGGGAAGAACCTTGCCTCCTACACTCCCAGTTTCGACATGGGAGC
CTTTGTGATTGTGGTGAATGCTGAGAAAGTTGCTGTGTCTGGAAAGAAGAGGAACCAGAAGCTGTACAGGAGGCATTCGGGACGAC
CTGGTGGTATGACAGTGGAAACTTTTGATCAGTTGCAGCAGAGGATCCCTGAAAGAATCATCGAGCATGCTGTTCGTGGAATGCTT
CCAAAGGGACGGCTTGGGAGAGCGCTGTTCAATCACTTGAAGGTGTACAAAGGCCCAGAGCATCCTCACGAGGCGCAGAAGCCGCT
TGATCTACCCATCAGGGACAAGAGAATACAGCTGCAGAAATAGAAACACCATGGAATATCTCTACTAAGCTACCATTATCGCCAAG
CTCATAAGAGTTTTTTCTTCTTCTCCGGTTTCTCTAGTTTCACATCTCAAAATCAGAGGAGACTTTGCAGATTCTTGTTTCTATTA
CTTGCTTCTATCAACTCTATGCTTTAAAACCTTTGTAATGTGAAATAATCTTCTATTCAGATTTTTGCTGC
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| GenBank top hits (Blast detail) | Score | e value |
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| XP_002887748 EMB1473 [Arabidopsis lyrata subsp. lyrata] | 1149 | 1e-123 |
| NP_177984 50S ribosomal protein L13 [Arabidopsis thaliana] | 1127 | 5e-121 |
| XP_002532120 50S ribosomal protein L13, putative [Ricinus communis] | 882 | 1e-092 |
| ABK96526 unknown [Populus trichocarpa x Populus deltoides] | 853 | 3e-089 |
| XP_002316846 predicted protein [Populus trichocarpa] | 822 | 1e-085 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9SYL9 50S ribosomal protein L13, chloroplastic | 1127 | 2e-122 |
| P12629 50S ribosomal protein L13, chloroplastic | 791 | 2e-083 |
| Q3MF94 50S ribosomal protein L13 | 498 | 2e-049 |
| Q8DMK8 50S ribosomal protein L13 | 498 | 2e-049 |
| Q8YPK6 50S ribosomal protein L13 | 494 | 6e-049 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9T1K1 50S ribosomal protein L13, putative | 882 | 9e-093 |
| A9PJH3 Putative uncharacterized protein | 853 | 2e-089 |
| B9I1Q8 Predicted protein (Fragment) | 822 | 8e-086 |
| A2WV25 Putative uncharacterized protein | 789 | 6e-082 |
| Q94J17 Os01g0749200 protein | 789 | 6e-082 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G78630.1 emb1473 (embryo defective 1473); structural constituent of ribosome | 1141 | 5e-125 |
| AT3G01790.1 ribosomal protein L13 family protein | 199 | 8e-016 |
| AT3G01790.2 ribosomal protein L13 family protein | 199 | 8e-016 |
| AT5G48760.1 60S ribosomal protein L13A (RPL13aD) | 115 | 5e-006 |
| AT5G48760.2 60S ribosomal protein L13A (RPL13aD) | 115 | 5e-006 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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