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Information for unigene UN10777
| FASTA Sequence |
| Unigene ID: UN10777 | Length: 1141 |
SSR | | AAGCGTATCCTGAGCGATCAAATGAGCCTGATTGTATTTATTACTTGCGTACCGGTGTTTGCGGGTACGGCTCAAGATGTCGATTT
AATCACCCGCGTGATCGTGGAGCGGTTGTTGGAGGTGTGAGAGGAGGAGGAGATGGAGCTTTACCGGAGAGAATGGGACAACCGGT
TTGTCAGCATTTTATGCGAACGGGAACGTGTAAGTACGGTGCGTCTTGCAAGTATCATCATCCCAGACAAGGAGGAGGTGGTTCCG
TTGCGTCTGTCTCTCTAAGTTACTTGGGATATCCATTACGTGCGGGAGAGAAAGAGTGTTCTTATTACATGAGAACCGGCCAGTGT
AAATTTGGTTTAACCTGTAGATTCAACCATCCAGTGCCTCAGCCACAGCAGCAGCAGCAGCAGCAACAGACGCAGACTATTTATCC
AACAATTCAATCTCAACCAATGCCTTCGTCTCAGCAATATGGTTTAGTTTTGACAAGGCCTCCTTCTCTTTTATCTGGTTCTTATC
TTCCAAGCCCATACGGCCCACCACCAATGGTTCTGCCTCCAGGAATGGTTACATACCCTAATTGGAATCCTTACCCGGCTTCTTTG
ACTGCAATGCCTTCTCCTGGAACTGGAACACAACCGTCTATTGGATCAAGCTCTGTTTATGGAGGAGTAGCGCCGTTATCTCCTTC
AGGTACTGCTTATACAACAGCAACATACCAATCTGGTGGACCTTCCTTGACTACTACTTCAAAAGAACAATCTTTCCCTCAGCGAC
CTGATCAGCCAGAGTGTCAGTACTTCATGAGAACCGGAGACTGTAAGTTCGGTGCTTCGTGTAGATACCATCATCCTCCTCTAGAT
GCAGTTCAGCCTCAAACTGGTGTTCTCCTCAGCTCCATTGGCCTTCCACTTCGTCCGGGAGTAGCGCAATGCACTCACTTTTCGCA
ACACGGTATCTGCAAGTTTGGTCCAGCGTGTAAGTTTGATCACTCTATGGCTTCTTCACTAAGCTACAGCCCGTCTGCTTCTTCGT
TAACGGATATGCCTGTGGCTCCGTACCCAATTGGTCCATCCTCACTCAGCGGGGCTTCAGCTCCGTAAGCTCAGCATTGAAACACA
CGCAGAGCTGTGACTGCTGTAGT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| ADK63414 CCCH type zinc finger protein [Brassica rapa] | 1759 | 3e-194 |
| XP_002884577 hypothetical protein ARALYDRAFT_477944 [Arabidopsis lyrata subsp. lyrata] | 1598 | 2e-175 |
| AAF08587 hypothetical protein [Arabidopsis thaliana] | 1588 | 2e-174 |
| NP_187292 zinc finger CCCH domain-containing protein 34 [Arabidopsis thaliana] | 1588 | 2e-174 |
| BAF02113 hypothetical protein [Arabidopsis thaliana] | 1588 | 2e-174 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9SQU4 Zinc finger CCCH domain-containing protein 34 | 1588 | 9e-176 |
| Q6NPN3 Zinc finger CCCH domain-containing protein 58 | 1354 | 1e-148 |
| Q84W91 Zinc finger CCCH domain-containing protein 32 | 966 | 1e-103 |
| Q5NAW2 Zinc finger CCCH domain-containing protein 6 | 922 | 2e-098 |
| Q2R4J4 Zinc finger CCCH domain-containing protein 63 | 836 | 1e-088 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9HSD6 Predicted protein | 1210 | 1e-130 |
| A5B1K6 Putative uncharacterized protein | 1209 | 1e-130 |
| B9RT23 Nucleic acid binding protein, putative | 1196 | 4e-129 |
| B9N500 Predicted protein | 1182 | 2e-127 |
| B9S3U9 Nucleic acid binding protein, putative | 1007 | 3e-107 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G06410.1 nucleic acid binding / zinc ion binding | 1588 | 8e-177 |
| AT5G18550.1 nucleic acid binding / zinc ion binding | 1354 | 1e-149 |
| AT2G47850.1 zinc finger (CCCH-type) family protein | 966 | 1e-104 |
| AT2G47850.3 zinc finger (CCCH-type) family protein | 966 | 1e-104 |
| AT2G47850.2 zinc finger (CCCH-type) family protein | 583 | 3e-060 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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