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Information for unigene UN10792

FASTA Sequence
Unigene ID: UN10792Length: 1594 SSR 
GGACTGATTGAAAGAAGATCCATTCACCTCTTAAAAAGAAGAAGAAGAAGAACTAATCTTCAAGAGTCCTCTTGTCGTTGGCATAG
AAAAGGGTATTAATCTTGAGCTTCAAGTTTGGAATCTGAATAAAGATTTTCTTTATTGATGGGAGGAGGAAATTCTAAAGAAGATT
GGAGGCAAGAGTCGCCATCTTCATCATCATCATCATGGGCGTCTCATCAGAGTTATCCTCAGTCTGGACCAGGCAGCTACAACTAC
CCTCCTCCACCCTCTTTTTCTCCATCTCCTGCGGCTCCCAGTTTTGGTGATCATCTTCCTCAACCGCCTTCTTATAGTCAAGAGCA
GGGCTATGCTTATCCTTATCCTCCCCCACAGCCACAGCCACAGCCTTCGCAGAGTACTCATGCTGCTTCTTCTTCTGATAGAAAAA
AGTTTGATCGTAGGTATTCCAGAATATCTGATAATTACGCTTCTTTAGATCAGGTGTCAGAGGCTCTAGGGCGTGCAGGTCTTGAA
TCTTCTAATCTTATCCTCGGTATTGATTTCACCAAAAGCAATGAATGGACAGGCGCCAAGTCCTTCAATAAGAAAAGCTTGCATCA
TATCAGCAGCAATACTCCCAATCCTTATGAACAAGCTATCACTATCATTGGAAGAACCTTAGCCTCCTTTGACGAGGACAACTTAA
TTCCTTGTTTTGGTTTTGGTGACGCATCAACTCATGATCAAGACGTGTTTAGTTTCTATCCAGAGGGTATATCCTCTAATGGATTT
GAGCAAGTTTTGGCTCGCTACAGAGAGATTGTCCCTCACCTTAAGCTCGCAGGACCGACATCTTTTGCACCCATCATTGAAATGGC
GATGACAGTGGTTGAGCAGAGTAGTGGCCAATATCATGTGTTAGTGATCATAGCCGATGGACAGGTAACAAGAAGTGTGGATACGG
AACATGGGCAGTTAAGTCCCCAGGAACAGAGGACTGTTGATGCAATTGTGAAAGCAAGTACTCTTCCTTTGTCAATAGTGTTAGTC
GGGGTGGGGGATGGACCATGGGACATGATGCAGGAATTTGATGATAACATACCTTCCCGAGCTTTTGATAACTTCCAATTTGTGAA
CTTCACGGAAATCATGTCGAAGAACAAAGAGCAGTCTCGGAAGGAGACAGAATTCGCACTCTCTGCTCTCTTGGAGATTCCTCCAC
AGTACAAAGCTACCATCGAGCTTGGCCTTTTAGGGCGAAGAAATGGGAGTATCCCAGAGAGAATCCCACTTCCACCTCCGGTGCAG
AGCGGTTCAACATTCTTCAACCCCTCCAAAGCTTCCCCAATACCGAATTTTGAACCTAGTGTACCTACTTATCCCATGGAAACCAA
GGATGTTGACGATAATCAGCTATCCCCGATATGTCTGAGCAATCCTAAAAACATGGCGTTTGGTTGCGGCCATCAGACATGTTATG
AATGCGGTCCAGGCCTTAAGGTGTGTCCTATTTGTCGTGCACCCATCCAGACCAGAATTAAGCTCTACTAACGACCATCCTCCTCT
CTCTCTCTCTGTAAAAAAAATGATAATAAGAAAATCATTTCTTCTC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_186814 E3 ubiquitin-protein ligase RGLG1 [Arabidopsis thaliana]18967e-210
XP_002884269 hypothetical protein ARALYDRAFT_896079 [Arabidopsis lyrata subsp. lyrata]17561e-193
NP_196946 E3 ubiquitin-protein ligase RGLG2 [Arabidopsis thaliana]17148e-189
BAH19894 AT5G14420 [Arabidopsis thaliana]17084e-188
XP_002271885 PREDICTED: hypothetical protein [Vitis vinifera]15463e-169

Swiss-Prot top hits (Blast detail)Scoree value
Q9SS90 E3 ubiquitin-protein ligase RGLG118963e-211
Q9LY87 E3 ubiquitin-protein ligase RGLG217181e-190
Q09221 Copine domain-containing protein 23792e-035
Q804S5 E3 ubiquitin-protein ligase mib11525e-009
Q6GNY1 E3 ubiquitin-protein ligase mib11525e-009

TrEMBL top hits (Blast detail)Scoree value
B9DGM7 AT5G14420 protein17083e-188
C5XFJ5 Putative uncharacterized protein Sb03g04329014602e-159
B7ZZX6 Putative uncharacterized protein14592e-159
Q153E2 Copine-like protein14314e-156
B9RAR5 Copine, putative14144e-154

Arabidopsis top hits (Blast detail)Scoree value
AT3G01650.1 RGLG1 (RING domain Ligase1); protein binding / zinc ion binding19034e-213
AT5G14420.1 RGLG2 (RING domain Ligase2); ubiquitin-protein ligase17198e-192
AT5G14420.3 RGLG2 (RING domain Ligase2); ubiquitin-protein ligase17198e-192
AT5G14420.4 RGLG2 (RING domain Ligase2); ubiquitin-protein ligase17198e-192
AT5G14420.2 RGLG2 (RING domain Ligase2); ubiquitin-protein ligase17198e-192

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
62  25%
 
214  50%
 
201  13%
 
181  13%

Unigene MembersMember information