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Information for unigene UN10832
| FASTA Sequence |
| Unigene ID: UN10832 | Length: 2744 |
SSR | | GGGAAAGCCAAGAAGCTCTAGGTTCCTCTGCTCATGCTCATGGAGGAACCCATCACACAGAGCTTCTTCTCTCTCCCTAATCTTCC
TCCTGAAATGATGGAAGAGATTCTCTTGAGACTACCGGTAAAGTCACTGAGGCGATTCAAATGCGTTTGCCTCTCGTGGAGATCTT
TGATCTCAGAGTCTCTGTTTACTCTAAAACACGCTTTGATGTTGGAGGCGTCCAAGGCAACCACTTATAAGAAGAGTCCGTACGGA
GTCATCACAACGTCTCGGTACCATCTCAAGTCTTGCTGCGTCCACTCTCTGTATAATGAGCCAATGGCCAACGTCTTTGAGCACGA
TGGTGAGCTTTTAGGCAGGGATTACTACCAAGTCGTGGGGACCTGCAATGGGTTGGTCTGTTTCCATGTAGATTACAACAAAAGCT
TCTACTTGTGGAACCCGACCATCAAGGTTCAACAAAGATTGCCTGGTTCGGATCTTGAAACGGGAGATGAGGTTGTTGTAAACTAT
GGGTTTGGTTATGATGAATCTGAAGATGACTATAAGATAGTTGCATTGTTGCAGCAAAGACACGAACTGAAGACAGAGGCAATGAT
CTACTCAACGAGACAAAAGCTATGGAGAAGAAGAAGCAGCAGCAACACTTGCTTTCCATCTGGAGTTGTTCTTGCTAACAAGTCAA
GATCCGGCATCTACATCAATGGAACACTAAACTGGGCAGCCACTAACTCCTCCTCATCATCATCATCAGTTTCTACCATCATATCA
TACGATATGTCACGAGATGTGTTCAAGGAGCTTCTTGGACCAGGTTGCTGCAAGAGAGGATGTTTTACATTGACGCTTGGAGATTT
GAGAGGATGTCTTTCCATGGTGTGTTATTGCAAAGGAGCAAATGCAGATGTTTGGGTGATGAAGGAGTTTGGAGAAAGAGATTCTT
GGTCTAAACTCTTGAGCATTCCCGGTTTGACCGAGTTTGTTAGACCGCTTTGGATCTCTAGAGGTTTGGTGGTTTTGCTGGAGTTT
AGATCCGGTTTAGCTCTCTACAACTGTTCCACTGGAAAGTTTCAGTACCCAGTTTCAGACAGCTTGAGTGGTTGTCGGGACGCTAA
AGTCTATGTCAAGACATTGGTTTCTCCGAATGACCTTTAAGATTGGCTCTTACCAGATTTGGTCCAGTTTATCTGCACACCACTGT
TATACATCTACTTAAAAGAGTTTTTTTTGTTGGTTCTCTCTTTAGTTGTAACGTTACATTTTCATGTGGGAAACAACATAAGAAAA
GCAATCAGTCAAATGTTCCTAACAAAATCATCACTATACCAATAACACATCATCTCTGCTTTTGAGGCTTCTTCTTCTTCTTAGGT
GCTCGCATCAAACAGTGGGATGATAAAAAAAATCTCAGGAGGATACTTTTTCGGAGGTGGAGCTGAGACCAGATCCTGAACTGGTG
AAGACAGGATTGTCTCTAGGCGTAGAGGAAGCTCCACGACCACTTGCACTGTTTCCCATATCTTTAGTCTTATGAAGCAGAAACGT
TCCTGACAAAATGGTGACAAAACCGCACAGTTCTGTCGCTATCTTTAACCCGCTCTGCGAAGCCCAATCCTTGAACATGATCATAC
TAGCTATGATGGTGAAAGTTGTGAACATAACGAAGTAAACCGGAGAAATAACCGCCGTGTTGAACGTATCCAATGCCTTGTTCAAG
TAATTGATTTGCAGAATGCAACAAACCGTGACTACTATAATAAAAATCCAAGTTTGGAAGTATTTGAACTGATTCATCTCCGAAAA
TGTTAGCTTTATGGCGATGGCCACAGCTTTCACACTCATAACAGTAAGAGAACCCATTAAAGAGCAGATTCCAACATAAACTATCA
AATGAGTCTTCCCATAGCGAGGTTCATAGTAGAAGATGAGTACAAGCACCGCAATCAATATCACAGCAGAGTACACTAGAAAGCCA
GGTTCAATAGCAAGCTTCCAAACTTGCTTGACTGATTTTATTTCCTGCTCGTGCGGGGCGTGTAGGACTATCGTTGTGGACCCGAC
AACACAGAGAACGCAACCAAGTACTCCGAACATATGAAGTTTCTCTTGCAAAATGAAATGAGCTAGCACTGCGCTGAAAATAATAC
TTAGAGCTCCCAAAGGTGTTACTAGAATAGCTGGTGCAAATGCATACGCTGCGAAATTGGCTACTTCCCCAACAATCATTGTAATC
ATTCCAGCCCACCACCATGGTTCATATAAGTATCCATGTCCTCCTTCACCTGCTCGGACACCGGATTCACCGGCCTTCTTGAGACC
TTTTTTCTTGATGATGAAGCTAGAGCCAATAAAGATACTTGAGGAGACTGCTAATACGAGTCCATTAATGTTATCAGATGACATCT
GATCCATCTTGGCTTTGTTTATATATAAGAAAGATGAATCAGCCCTGAGAGATTAAAATTAAACTCCTCCTACAAGAGTTAAAATT
GTTCCACCTTTTAAATCTCACATTTAATTATTAATTCTCTCCAATCAATTTTTTATTTATAAAAAATTATGTAGGAGAGACAAGCA
AGGGAAGAACATGACAGACACTTATATCCAATCGTTTCACACATCATAATCAAAACACGGAACTCAAACACGGTTTCAGATTTACA
ATCCAGACAAAACGAATTACGGAGAAAAGTAACAAAGGAGGGAATAATATCTCGCGAGCAAGAACGTGGCCCTCTTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_189029 uncharacterized protein [Arabidopsis thaliana] | 1550 | 2e-169 |
| XP_002883467 hypothetical protein ARALYDRAFT_898929 [Arabidopsis lyrata subsp. lyrata] | 1531 | 3e-167 |
| XP_002868336 hypothetical protein ARALYDRAFT_493534 [Arabidopsis lyrata subsp. lyrata] | 1500 | 1e-163 |
| NP_567411 uncharacterized protein [Arabidopsis thaliana] | 1496 | 3e-163 |
| AAM65585 unknown [Arabidopsis thaliana] | 1485 | 6e-162 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LIR8 F-box/kelch-repeat protein At3g23880 | 1563 | 2e-172 |
| Q3SWX0 Magnesium transporter NIPA2 | 768 | 3e-080 |
| Q8N8Q9 Magnesium transporter NIPA2 | 765 | 7e-080 |
| Q5R7Q3 Magnesium transporter NIPA2 | 765 | 7e-080 |
| Q9JJC8 Magnesium transporter NIPA2 | 748 | 7e-078 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LIR9 Gb|AAF34307.1 | 1550 | 1e-169 |
| B3LFA3 At4g13800 | 1496 | 2e-163 |
| Q8LA45 Putative uncharacterized protein | 1485 | 4e-162 |
| B9RWD1 Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative | 1328 | 6e-144 |
| B9SSN6 Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative | 1190 | 6e-128 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G23880.1 F-box family protein | 1564 | 1e-173 |
| AT3G23870.1 permease-related | 1551 | 5e-172 |
| AT4G13800.1 permease-related | 1496 | 1e-165 |
| AT1G34470.1 permease-related | 1166 | 2e-127 |
| AT4G09640.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF803 (InterPro:IPR008521); BEST Arabidopsis thaliana protein match is: permease-related (TAIR:AT1G34470.1); Has 864 Blast hits to 850 proteins in 148 species: Archae - 2; Bacteria - 54; Metazoa - 361; Fungi - 239; Plants - 141; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink). | 1141 | 2e-124 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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