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Information for unigene UN10836

FASTA Sequence
Unigene ID: UN10836Length: 1411 SSR 
ACAAAACTATCAAATATAATTGAAAAGTAGAATGTTTTACATCTTTATCAGTAATCAATCACATGTCCGAACCAATAACAAGAAGG
TAATAAATAACACTTATGCTTAAGTGTTCAATCACTTGCCTATTCCATTTTGTTTTGAAACTCAGATGTGTCATAGACACGAGCAG
TGTTGTCAACAGAGACCGACACAATGAAGTCGGTGTTGGTGGAGACTGAGACGGCTTGGACTGTATCCTGGTGGCCATGGTAGGTG
TGGACGCAGTTTCCTAATAAGCTGTCCCAAATGCTCACTGTGCCATCGGCACAGCCTGTGGCTAAGTACTTTGAGGTTCCTATCCA
TGTCACGCAAGTCACACCTTCCGCGTGGTCGCAGATGAACTAGGAGTTGAATGTGAAGATCCCAGATGACAAGCTTCTTGTCCATC
CCACCCTGTTGCAGCCATAGGGATAGTAGCGGAGCTTGGTGAAAACTTTACGCATTCAACTGACTCTGTATGAGACGTCAGAGAGC
TCACAACCTTTCCGGTGACTATATTGACGATGTGAACAGAACCGTCTTTTGAGCCACTGATAGCAAGACTGGAGTTGGAGTTAATG
TCCAAGCATATCAACCCTTCTGTATGGTATGGATGACCTTTAACCACATGAATGCTTTCACAACTCTTTGGGTTCCATACTATCAA
ACTAGCATCATCAGAGCCAGTACAGATTAGTTTACCGTCAGGAGTGAAGTCACCGCAAGTGACGCTCTGATTGTGACCAGAAAACA
TATTAAGATAGGCTTCTTTATCAGCATTCCACATCCACATAGAACAATCTTCTGATCCAGCCAACACAACGTGTCCTCTCGGATGC
CACTTCACCCACTCGATACCACCACCAGGACCGTCCAAAACACATTTCAAAGTCCCAGACGACGCATCAAAGATCTGAACGACACC
ATCCAACCCACCAGAGGCAACTAACTGTCCATCGTAGCTAAAAGCTAGAGAAGAAACAGAGTCTTTGTGACCTAGAAGCTCAGCAG
CCCAGTCTCCGTTGCCGATTTTCCAGAGAAAGGCTTTGTCATCTCCACCTCCGGTTGCTACTAGGGTTGGGTATAAGGGCTACATG
CCAATGCATAAAGCTCACCTTTGTGACCAGTGAATGTGTGAATGGAGTCATCGTTCTCATCAAACACTTCATCATCATCATTGTTG
TTGTCATTATCATCCTCATCATAGGCGTCAGGAAGATCTTCTCCGTCGACGTCGATTTCATGGAGGACATCGGATTCACCTAGGAA
AACGTCTCCCTCTTCTTCTTCTTCTTCCATTGCTGGATTATTCATCTCTGTGTTACTCATCTTCTCCACAGAGTTTTTACAGCCAC
CACGATGAAGAAGAAACAGAACAGAGACAGACTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_177329 transducin/WD-40 repeat-containing protein [Arabidopsis thaliana]11465e-123
XP_002887393 transducin family protein [Arabidopsis lyrata subsp. lyrata]10372e-110
AAF43237 Contains similarity to the vegetative incompatibility protein HET-E-1 from Podospora ansering gi|3023956; It contains 5 WD40 domains PF|00400 [Arabidopsis thaliana]9602e-101
ABS32230 transducin family protein [Carica papaya]9468e-100
XP_002327217 predicted protein [Populus trichocarpa]9395e-099

Swiss-Prot top hits (Blast detail)Scoree value
Q00808 Vegetative incompatibility protein HET-E-13074e-027
O61585 Katanin p80 WD40-containing subunit B12994e-026
Q8YRI1 Uncharacterized WD repeat-containing protein alr34662951e-025
Q8YV57 Uncharacterized WD repeat-containing protein all21242823e-024
Q8H0T9 Katanin p80 WD40 repeat-containing subunit B1 homolog 12752e-023

TrEMBL top hits (Blast detail)Scoree value
Q8RXQ4 Putative uncharacterized protein At1g7184011464e-123
Q9M9G2 F14O23.22 protein9601e-101
A7L4A5 Transducin family protein9466e-100
B9MW44 Predicted protein (Fragment)9394e-099
B9IQM6 Predicted protein9261e-097

Arabidopsis top hits (Blast detail)Scoree value
AT1G71840.1 transducin family protein / WD-40 repeat family protein11462e-125
AT5G08390.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT5G23430.1); Has 84267 Blast hits to 30722 proteins in 748 species: Archae - 68; Bacteria - 7813; Metazoa - 39755; Fungi - 16342; Plants - 8110; Viruses - 6; Other Eukaryotes - 12173 (source: NCBI BLink).2842e-025
AT5G23430.1 transducin family protein / WD-40 repeat family protein2752e-024
AT5G23430.2 transducin family protein / WD-40 repeat family protein2752e-024
AT1G61210.1 WD-40 repeat family protein / katanin p80 subunit, putative2724e-024

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
62  67%
 
91  33%

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