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Information for unigene UN10880
| FASTA Sequence |
| Unigene ID: UN10880 | Length: 915 |
SSR | | CTCGAACTAACATCGTGCCCCACATTTCCACCGTCCGATTCGTTTTTTCATAATAATAACAACAGCAAAAACAAATGTTTTGATGA
GAAAATAAATAGCAATTAAACTCTCTCTGTAAAATCAGTTCCCGCTTCGGACAGTCAGATACGGAGAAGGACGCAACACATGACGT
CATCACATCTGGCTTGTTGTTTTTATTTTTTTGCATTGGTCCTGCTTAGTGACACGTCAGCGGAGACGACGAGAGCCGTTGATTGG
ACATGAGGAAGAGGAAGAAGAAGAAGAAGGGACGGCTGAGATGCCTTGACGCGAGAGCTCAGCTAAAACGCTCTCCGCGGATGGTG
GTTTTAGCCCGAGCGGTAACGGCAGCCACGGTTTGCTAATCGCTTCTTTAACCGCTTGATCAACCATTTCCTCGTCCAGCTGAATC
GCCGAAGGAGTACTAAATGCTCCGGTTACCGGAGGAGAACTGAATGTCCCGGTTACCGGTTGTACAACCGGACAACCCCATGCATT
ACCGTTTACCGTTGGATAAGGTGGTCTCCAATGCCACGGAGGTAGTTGACCAGAGGATTGCAGTGGCGGCGGCCATAGAGGCGGAA
CTGCTCCAGGCGGATGAACACCGGGGAGACCCCAAACGGGATAAGCCATTACAGGACGGTGTTGCTGCTGAAAACCATTATACTGC
CGATGGATTTGTCTTTGGTTCTCTCTAGATTGTATCCATCTACGGTTATGATCCTCCTTAGGGAGAAGATTCCTCCTATGCATCCG
AAATTTCTGAAGATGGCTAGCTACATTGTGTCGAGTTAGGCCGTCTACTTTCATCAGTTCAAGAATCCGCGAAGGTATCGCTTGAT
CGACTCCAAGTTGCTCTACCGCTTGCACAAACTTCTTGTGCAGCTCTTGTGTCCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002868017 pseudo-response regulator 2 [Arabidopsis lyrata subsp. lyrata] | 953 | 7e-101 |
| NP_567548 two-component response regulator-like APRR2 [Arabidopsis thaliana] | 949 | 2e-100 |
| NP_001078405 two-component response regulator-like APRR2 [Arabidopsis thaliana] | 716 | 2e-073 |
| CAA17145 putative protein [Arabidopsis thaliana] | 685 | 8e-070 |
| XP_002527635 transcription factor, putative [Ricinus communis] | 414 | 2e-038 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q6LA43 Two-component response regulator-like APRR2 | 949 | 9e-102 |
| O49397 Two-component response regulator ARR10 | 187 | 2e-013 |
| Q9FGT7 Two-component response regulator ARR18 | 187 | 2e-013 |
| Q9ZWJ9 Two-component response regulator ARR2 | 181 | 1e-012 |
| Q8L9Y3 Two-component response regulator ARR14 | 177 | 3e-012 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9SNR6 Transcription factor, putative | 414 | 1e-038 |
| A5B243 Putative uncharacterized protein | 388 | 1e-035 |
| B9N2R7 Predicted protein | 361 | 2e-032 |
| D6MJX9 Transcription factor (Fragment) | 313 | 7e-027 |
| B9N2R8 Pseudo response regulator | 271 | 6e-022 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G18020.1 APRR2; transcription factor/ two-component response regulator | 950 | 6e-103 |
| AT4G18020.2 APRR2; transcription factor/ two-component response regulator | 950 | 6e-103 |
| AT4G18020.3 APRR2; transcription factor/ two-component response regulator | 950 | 6e-103 |
| AT4G18020.4 APRR2; transcription factor/ two-component response regulator | 716 | 8e-076 |
| AT4G18020.5 APRR2; transcription factor/ two-component response regulator | 716 | 8e-076 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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