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Information for unigene UN10888

FASTA Sequence
Unigene ID: UN10888Length: 1883 SSR 
GGGCCTCATTCTCCCTCCTTAGCTCATAAGTTTATTGCTCTTTCACAAAAAAAAGTAGAAATAATTTTTGCCAATGGCTCTGCGTG
GAGATGAGCATGAGTTTATGAACTTAAGAGAATGGGATCGAAGAGCTCGATTGATCCTAGAAAACCCTACTTCAAGAAGGTTCTCT
GCTTCCTACGTTGGAAGCTTTAGAGAAGATCATAAGTCTTCTTCAAGAACAAACTTAAGCAACATCTCTAGTACTGCCTCTTCTCC
TGGCTACACCCTCAAAGACGAGATTGACCCAGCAACATATTCCTTCACCAATGCACTCAAGGCGTTACAAGCGAAGACAAAGTTTA
ATAACAGAGAATGGTTAGCACAAGAAGGATTTGCGTTGAATTCGAAGTGGAACGAAGCAGAGAAATATATATGTAATCCAGTGTCT
GGAGAAGTTCCAATGGAGTGTTTGTCTTCTAAAACACTAAGTGCAAGATCTTTCAGAAACTTGACCACCATGTCTGCTCCTCTTCA
CTACCCTAATCTTAATCCATTGGTAAATAATATTGGTCCAAACAAACCTAATGATAATCCCCAACGTTAGAGTTATCCACGAGGAT
CTTTATGCTCCTGATCCTGTTCTTGTTCGAGAAAAGAAAGTTGTGGGGCTGAAACAAGATGTGGGCATTCAGAGTACGTCGGTGGA
TCTTAGCTCCGGTAGCCCTAGTCCGGCAAAGACGCCTACAATCATGGAACGGTCACTGAAACGACACGTGAAGGATAATGATTCGC
CAGTGGATTTTACTCTCAAACTAGAAGGTCAACAAGAGGATTTGAAGTTAGAAGAGAAGCAAGGGATGAGTACTAAAGAAGAAGAA
GAGATGCACGAGATGAGTAATAATAAAGAAGAAGAGAAGCAAGAGATGAGTATTAAAGAAGAAGAAAAAAATGAAGAAGCAGAAGA
AGAGAGGAGGTGGATGCTTCTCATGGAGAAGATCAAAACAAAGAAAACCAAAGTACATCTTCCCTATTTGTGTTCCTCATCTTGTC
AAAGGTTGTTGAAACAACAAGGAGTTTCTACAAAAGCAACAAGAAAGAACTTCTTAATGAGGTTATTATTATTATTATAAGTATTA
GTCTTCCCTCTTCATATAAGATAATTCATCATTTATGGGAATGTCAAAAGCTTAACAGTTCTTTTGCTCTCTCCCCTTTTCCTCTC
TATAACAAAATATGCTTCTCTCTTAGAGTCCCCCATCTGTTGTGCTTTCTTCTTCTTCATGATTATTCTCTGTTTCCTCCTCCTCC
TCCTGATCAGCCTTCCATTCCATAATAGCTAGAGTGTGTCGACCCCCACATGCCACAAACTTAGCTATCCACTTTCCATCCTCTTC
TTCATCTGCGTGGTTAAACTGTCCTTCGGGTGGTGGAATCTCTATAGGAAGCTCTGATGGTTGTCCCGTCGTCACTTTTCTTCCAT
ACCCGAGTCTACCATGGTCTCCCCTACCAAACGAGAAGATCCTACCGTCTCTTGTCAAAGCAACTGAATGAGTTCCACCACATGAG
ACCTGAATGATGTTTTCTCCAGCCAAGAGATTGACTTTCTGTGGAACCATTTTGCTGCTCTTGTCATTGTCACCAAACCCAAGCCT
ACCATGTTCCCCTCTTCCCCAAGCATACACCTCTCCTTGTTCGGTTAAAGCTGTTGAATGCCATCCACCAGCAGCTATATCAACCA
AAGTGAGATCATCGAGGCCTTGAACAGGAATAGGATGAGATCTAGGTGGGTATCTCCGGTTCCAAGTTGTCCATATTCATTATTAC
CCCAAGCCCACAGAGTCCCGTCTTCTTTGAGAGCAAGTTATGAAAGCTCCAACAGCATCAGACGAACGTTTTCAGAC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_197108 regulator of chromosome condensation repeat-containing protein [Arabidopsis thaliana]8081e-083
AAM61698 UVB-resistance protein-like [Arabidopsis thaliana]8035e-083
XP_002873752 regulator of chromosome condensation family protein [Arabidopsis lyrata subsp. lyrata]7901e-081
XP_002884323 regulator of chromosome condensation family protein [Arabidopsis lyrata subsp. lyrata]7775e-080
NP_568324 uncharacterized protein [Arabidopsis thaliana]7758e-080

Swiss-Prot top hits (Blast detail)Scoree value
Q15751 Probable E3 ubiquitin-protein ligase HERC12441e-019
Q9VR91 Probable E3 ubiquitin-protein ligase HERC22422e-019
O95714 E3 ubiquitin-protein ligase HERC22314e-018
Q4U2R1 E3 ubiquitin-protein ligase HERC22271e-017
Q8IVU3 Probable E3 ubiquitin-protein ligase HERC62233e-017

TrEMBL top hits (Blast detail)Scoree value
Q9LFS0 At5g160408088e-084
Q8LEY9 UVB-resistance protein-like8033e-083
B3H6N4 Uncharacterized protein At5g16030.37755e-080
Q8RWE0 Putative uncharacterized protein At5g160307755e-080
Q2V3Z2 Putative uncharacterized protein At3g025107721e-079

Arabidopsis top hits (Blast detail)Scoree value
AT5G16040.1 regulator of chromosome condensation (RCC1) family protein8084e-086
AT5G16030.1 unknown protein7753e-082
AT5G16030.3 unknown protein7753e-082
AT3G02510.1 regulator of chromosome condensation (RCC1) family protein7726e-082
AT5G16030.2 unknown protein7637e-081

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
122  50%
 
81  25%
 
61  25%

Unigene MembersMember information