 |
Information for unigene UN10892
| FASTA Sequence |
| Unigene ID: UN10892 | Length: 1102 |
SSR | | TTTTTTTCCTTTCTCTCTCTCTCTTGCTCCGACCCTTTTCAAAATTTGTAGCTAATTATGGCCTTAGAGGCTATTGTTTACCCAAA
AGACCCATTCTCCTACATCTCTTACAAAGATTTTCAGTCTCACGACTTATATTTTCAACAAGAAGAAGATCGAGACCCCCTAGAAA
CCAAGAACAACATTAAGCTAGGGCAAGAACAAAGACAAGGGTTTGCGAGTAAAAGCGGAGATAACAATGATGATTATAACTACAAC
GATCAGGAGGATCTTCAATGGCCACGAGACGACCTTCCTTATGGACCTATCGTCGACACTGAGAACCAGCCTCCACTGTTGGTTTT
AGCGACGGTAGAAGGGAGGAGAAAGAGGAGGAGGACGAAGAGTAGCAAGAACAAGGAAGGGATCGAGAACCAGAGGATGACTCACA
TCGCCGTCGAGAGAAACCGTCGGAAACAAATGAATGAGTACCTCGCCGTTCTCCGTTCTCTCATGCCACCTTCTTATGCTCAAAGG
GGAGATCAAGCGTCAGTAGTAGGCGGAGCCATTAACTACTTAAAGGAGCTTGAGCATCATTTACAATCAATGGAACCTCCGTTAAG
CACCCCCGCCATAGGAGAAGCCGGAGGCGGCCCCGGCGACCATAAAACCATTGCTGCCAGCTCATCTGGACCATTCTCAGATTTTT
TCGCTTTTCCTCAATACTCGAGAAGGCCTTCCTCGTCGTTGGTGGCTGAAGGAACGGCGGAGATAGAGGTGACGATGGTGGAGAGC
CATGCAAGTGTGAAGATACTTGCGAAGAAGAGACCAAAACAACTTCTTAAACTGGTGGCATCGATACAGAGCTTAAGGCTTACTGT
TATTCATCAATTCTTATTTGTTAAAAATACAAAATCTGACTATCAAAATAATGATTCTTGTAAGAATCAGGGACCAGAAAGATGAC
ATATGCCTATACATGTGTGTATGTGTGTACATGTGTACTTGTGGAAGTTTTGGTGGTCACATTGACAGAACTGTGGACGCGCACTG
TGCACGGCAGAACGAAATGACGCCACTAGTTTCAGACACTCATAAGCCTCTTCCTCAAACATATAGATTT
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_177366 transcription factor bHLH96 [Arabidopsis thaliana] | 1043 | 3e-111 |
| XP_002893233 hypothetical protein ARALYDRAFT_335492 [Arabidopsis lyrata subsp. lyrata] | 666 | 2e-067 |
| NP_564171 transcription factor bHLH94 [Arabidopsis thaliana] | 653 | 5e-066 |
| AAM65775 unknown [Arabidopsis thaliana] | 651 | 9e-066 |
| CBX31916 basic helix loop helix 1 [Medicago truncatula] | 508 | 4e-049 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9C7T4 Transcription factor bHLH96 | 1043 | 1e-112 |
| Q9SK91 Transcription factor bHLH94 | 653 | 2e-067 |
| Q9M128 Transcription factor bHLH57 | 385 | 3e-036 |
| Q9FKQ6 Transcription factor bHLH99 | 355 | 8e-033 |
| Q56YJ8 Transcription factor FAMA | 297 | 4e-026 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9GV13 Predicted protein | 495 | 8e-048 |
| A5BQU4 Putative uncharacterized protein | 487 | 7e-047 |
| Q2HTN6 Helix-loop-helix DNA-binding | 480 | 4e-046 |
| B9RF23 DNA binding protein, putative | 473 | 3e-045 |
| B9RJR6 DNA binding protein, putative | 451 | 1e-042 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G72210.1 basic helix-loop-helix (bHLH) family protein (bHLH096) | 1043 | 1e-113 |
| AT1G22490.1 basic helix-loop-helix (bHLH) family protein | 653 | 2e-068 |
| AT4G01460.1 basic helix-loop-helix (bHLH) family protein | 385 | 3e-037 |
| AT5G65320.1 basic helix-loop-helix (bHLH) family protein | 355 | 8e-034 |
| AT3G24140.1 FMA (FAMA); DNA binding / transcription activator/ transcription factor | 297 | 4e-027 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
