RadishBase

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Information for unigene UN10994

FASTA Sequence

Unigene ID: UN10994	Length: 941	SSR
GGAATGGAAACCCACTAGTCCACCTCTTAAAATCACAAGTCTAGAGTGAGAGAGAGAGAGTGAGAGAGAGAGAGAGAGTTTTAGAC AGAGAGAGAGAAAAAAATGGCGAGATTCACGGTGTTGATTGCGGCAGTGGTACTGGCCATTGTAGTGGCGGTGCCTGAAGTAACTG CGAAGAAGTACACAGTCGGCGAGAACAAGTTTTGGAACCCCAACATCAACTATACCATTTGGGCTCAGGGAAAGCATTTCTACCTC GGAGACTGGCTCTATTTCGTGTTCGACAGGAACCAACACAACATTCTTGAAGTAAACAAGACCGACTACGAAAACTGTGACGCCGA CCATCCTCTCGTAAACTGGACGCGTGGAGCTGGGAGAGACATTGTCACTCTCAACGTGACCAAACATTACTATCTACTCGACGGAA GGGGTGGCTGTTACGGCGGCATGAAGCTCGCTGTTAAAGTCGAGAAGCTTCCTCCTCCACCGAAAGCGGCACCTGTCAAGAGCATT GGTTCAGTTTCCATGGCCACTGGTGTTGCTCAGTTCGTGATCCCGTTTGCTCTTTTCTGCTTTATAGATCCTTCTTGTTCCGGGGT GGGTTATTTCGTTGACTTGGAGTCGAGTGGAAGCGTGTAGAGGCGTGTGGAGAGCTTTTCCTTCCTGTGGTGGTGTTGAATCGTCG TTTTTCAGAGGTTCAGATGTTCATTGGTCAGTTTTAGGTCGTCGGTGATCTGATTTATATGCTGGCTTTTAGATCTGCGATTCTTT CCCTTGAGTGTTTGATGGTTTATGTGATAAATCTCTCCCCTCTCTGTTTTGGTTCACCTCATCTGTTTTGCCTTGTCTTACCCCAT TCAACGGAGAGGATGTATCCTCTAATACTTGATTGACATTGATTTATCTAGCGCTCTTCATCTTCAGTGTGACAGTGGTGT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
ABL97976 lamin [Brassica rapa]	819	2e-085
NP_197039 Lamin-like protein [Arabidopsis thaliana]	750	2e-077
XP_002873721 hypothetical protein ARALYDRAFT_909508 [Arabidopsis lyrata subsp. lyrata]	744	1e-076
AAN60271 unknown [Arabidopsis thaliana]	734	2e-075
CAA65749 lamin [Brassica oleracea]	613	2e-061

Swiss-Prot top hits (Blast detail)	Score	e value
Q39131 Lamin-like protein	750	1e-078
Q41001 Blue copper protein	173	9e-012
Q8LG89 Basic blue protein	159	4e-010
Q9T076 Early nodulin-like protein 2	144	2e-008
Q02917 Early nodulin-55-2	121	9e-006

TrEMBL top hits (Blast detail)	Score	e value
A1YMX0 Lamin	819	2e-085
Q39370 Lamin	613	1e-061
Q8L9G8 Putative lamin	555	7e-055
Q9MAC1 At3g01070	555	7e-055
C6SVN5 Putative uncharacterized protein	547	6e-054

Arabidopsis top hits (Blast detail)	Score	e value
AT5G15350.1 plastocyanin-like domain-containing protein	750	1e-079
AT3G01070.1 plastocyanin-like domain-containing protein	555	4e-057
AT4G12880.1 plastocyanin-like domain-containing protein	515	2e-052
AT2G27035.1 plastocyanin-like domain-containing protein	294	7e-027
AT3G60270.1 uclacyanin, putative	192	5e-015

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	1			50%


7	1			50%

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