RadishBase

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Information for unigene UN11023

FASTA Sequence

Unigene ID: UN11023	Length: 670	SSR
GGACAATTAAGCTCAGAGAGAGAGAGAGGATCGAGGGGGCGTAGGCTTGCTCTGCGTGATCACCGGAGAGAGAGAGAGAGAGATGT CGAGCTCATCACAGTTCAGGTACACGCAGACGCCGTCGAAGGTAGTGCACCTTCGGAATCTGCCGTGGGAATGCGTGGAAGAGGAG CTCATCGACCTATGCAAACGATTCGGAAAGATCGTCAACACCAAGACCAATGTCGGCGCCAATCGCAACCAAGCCTTCGTCGAATT CGCTGAAGTGAATCAGGCTATATCAATGGTATCGTACTATGCTTCGTCTTCAGAGCCTGCACAGATTCGAGGGAAAACCGTTTATA TACAGTACTCTAATCGTAATGAGATTGTCAACAATCAGAGTCCTGGTGAAGTCCCTGGCAATGTCCTCTTGGTTACCTTTGAAGGA GTCGAGTCTCACGATGTCAGCATCGATGTCATTCATCTGGTGTTTTCTGCTTATGGCTTCGTCCACAAAATTGCCACTTTTGAGAA AGCTGCTGGTTTCCAGGCACTAGTTCAGTTTACTGATGTGGACACTGCTTTAGCAGCAAGGACTGCGCTGGATGACAGAAGTATAC CCAAATATCTGCTTCCAGAGCATGTAGGCTCTTGCAATTTGCGAATGTCTTATTCAGCTCACACTGAT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002884293 polypyrimidine tract-binding [Arabidopsis lyrata subsp. lyrata]	935	4e-099
AAC62015 polypyrimidine tract-binding protein homolog [Arabidopsis thaliana]	921	2e-097
NP_186764 polypyrimidine tract-binding protein 1 [Arabidopsis thaliana]	921	2e-097
XP_002283748 PREDICTED: hypothetical protein isoform 1 [Vitis vinifera]	874	5e-092
ABB02630 polypyrimidine tract-binding-like [Solanum tuberosum]	857	5e-090

Swiss-Prot top hits (Blast detail)	Score	e value
Q9MAC5 Polypyrimidine tract-binding protein homolog 1	921	9e-099
Q9FGL9 Polypyrimidine tract-binding protein homolog 2	763	2e-080
Q6ICX4 Polypyrimidine tract-binding protein homolog 3	282	1e-024
Q8BHD7 Regulator of differentiation 1	176	2e-012
O95758 Regulator of differentiation 1	128	8e-007

TrEMBL top hits (Blast detail)	Score	e value
B9DFT7 AT3G01150 protein	921	1e-097
Q2XTB3 Polypyrimidine tract-binding protein-like	857	3e-090
Q38JI2 Polypyrimidine tract-binding-like	857	3e-090
C6T9C0 Putative uncharacterized protein	850	2e-089
A9PHS8 Putative uncharacterized protein	848	4e-089

Arabidopsis top hits (Blast detail)	Score	e value
AT3G01150.1 PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1); RNA binding / nucleic acid binding / nucleotide binding	921	9e-100
AT5G53180.1 PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2); RNA binding / nucleic acid binding / nucleotide binding	763	2e-081
AT3G01150.2 PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1); RNA binding / nucleic acid binding / nucleotide binding	587	5e-061
AT1G43190.1 polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putative	282	1e-025
AT1G43190.2 polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putative	282	1e-025

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


9	1			50%


7	1			50%

Unigene Members	Member information