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Information for unigene UN11039
| FASTA Sequence |
| Unigene ID: UN11039 | Length: 1316 |
SSR | | GATACTCGTATAACTATTCCAAACCTAGTTTTCTAAAATATATTTATTTTCTTTTGTTTCTTCATCGTATATCTATCATCGATATT
GTTCCTGTTCAGTCTTGAAATTTACCCTAAAAAAACATTTTTAAAAATATTAGTATCTCTCTTCTCTTTGGAGGCTTGTTTGTTTG
TTTACTGCATGGAATCGTCGTCGGTAACAACTTCGTCGGCGATTCAAACCTCTTCCGGGTCAGAGGAGAATCTCATGGAGCAGAGG
AAACGTAAGAGGATGCTCTCAAACCGTGAGTCAGCGAGGAGATCAAGGATGAAGAAACAGAAGCTCCTGGACGATCTAACGGCTCA
GGTAAACCAGCTCAAGAAAGAGAACAGCGAGATCGTGACAAGTGTCAGCATCACCACGCAGCACTACTTGGCTGTTGAAGCAGAGA
ACTCTGTTCTCAGAGCTCAGCTCGATGAACTCAGCCACCGGCTCCAATCTCTCAACGACATCATCGGTTTCCTCGACAACACCAAC
GGGGTTTGTCCGAACCCTCTGACCGGTCCAGAGTCTGATGACTTCCTCGTGAATCAGATGAATATGAACATGTTTCATATGATGAA
CCAGCCTCTCATGGCATCTTCTGATGCTTTGCTGTATTAGAAATGTGGACCCAAAAAAACCTCGAAATTATCTAATGGGGCCGTTT
CTTTGTCAGATTTTAAGTTATGTCCAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGAAG
AAGAAGAAGATGCCGAGAGAAATAATAACGCTGCAAGTGGGACAATGCGGGAACCAGATCGGGATGGAGTTCTGGAAACAGCTCTG
CCTGGAGCACGGCATCAGTAAAGACGGTATCCTCGAGGACTTCGCTACTCAGGGAGGAGATAGAAAAGATGTGTTTTTTACCAAGC
GGATGATCAACACTATATCCCACGAGCTTTACCCATCGATTTGGAGCCTAGAGTTATCAATGGTATTCAGAACGGGGACTACCGGA
ATCTCTACAACCATGAGAACATCTTCGTCGCTGACCACGGTGGTGGTGCTGGTAACAACTGGGCCAGTGGATATCACCAGGGGAAA
GGTGTTGAAGAGGAAATAATGGACATGATTGATAGAGAAGCTGATGGTAGTGATAGCCTTGAGGGCTTTGTTCTTTGCCACTCCAT
TGCTGGTGGCACTGGCTCAGGTATGGGCTCTTATCTACTGGAGACTTTGAATGATCGCTACAGCAAGAAGTTGGTTCAGACTTACA
GTGTCTTCCCCAATCAAATGGAAACA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_191724 tubulin gamma-1 chain [Arabidopsis thaliana] | 676 | 2e-068 |
| NP_196181 tubulin gamma-2 chain [Arabidopsis thaliana] | 666 | 2e-067 |
| XP_002871173 gamma-tubulin [Arabidopsis lyrata subsp. lyrata] | 666 | 2e-067 |
| CAN61748 hypothetical protein VITISV_014578 [Vitis vinifera] | 660 | 1e-066 |
| XP_002320847 tubulin gamma-1 chain, at3g61650-like protein [Populus trichocarpa] | 660 | 1e-066 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P38557 Tubulin gamma-1 chain | 676 | 6e-070 |
| P38558 Tubulin gamma-2 chain | 666 | 9e-069 |
| P34785 Tubulin gamma chain | 640 | 1e-065 |
| O49068 Tubulin gamma-2 chain | 636 | 3e-065 |
| Q9XFG3 Tubulin gamma chain | 636 | 3e-065 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A5BTA6 Putative uncharacterized protein | 660 | 7e-067 |
| B9I8U5 Tubulin gamma-1 chain, at3g61650-like protein | 660 | 7e-067 |
| B9T339 Tubulin gamma chain, putative | 660 | 7e-067 |
| Q8GZT0 Gamma-tubulin | 656 | 2e-066 |
| B9GQG6 Tubulin gamma-2 chain | 648 | 2e-065 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G61650.1 TUBG1 (GAMMA-TUBULIN); GTP binding / GTPase/ structural molecule | 676 | 6e-071 |
| AT5G05620.1 GCP2 (GAMMA-TUBULIN COMPLEX PROTEIN 2); GTP binding / GTPase/ structural molecule | 666 | 8e-070 |
| AT4G34590.1 GBF6 (G-BOX BINDING FACTOR 6); DNA binding / protein heterodimerization/ transcription factor | 608 | 4e-063 |
| AT1G75390.1 AtbZIP44 (Arabidopsis thaliana basic leucine-zipper 44); DNA binding / protein heterodimerization/ transcription factor | 342 | 3e-032 |
| AT2G18160.1 ATBZIP2 (ARABIDOPSIS THALIANA BASIC LEUCINE-ZIPPER 2); DNA binding / protein heterodimerization/ transcription factor | 297 | 5e-027 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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