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Information for unigene UN11065
| FASTA Sequence |
| Unigene ID: UN11065 | Length: 1408 |
SSR | | ATCACGCGCCACTCTTCTTCCACCACCACCTCTCTTTAACGACGAGATGAATAGCTTGACGACGACGACGACGAGTCCAATGGCTC
GAGCCTTGGTGCATCTTCACTCTTATGCACCGTTAAACTTACGTTCGAGACAGCCACCTGCAGGAGTATGTTTAAGACCGCCACGC
AGGACTCCACGACTCGTCTGTATGGCCGAGCCTTACCTCATCACGAAAATGGAGTCTGTTGAGAAGACATGGAAGGAGTTATCTGT
AAAACTAGCAGACCCAGATGTTGTTTCTAATCCTTCTGAATACCAGAAACTTGCACAGTCCATGTCCGAGCTTGACGAGGTTGTAT
CCGTATTTAGGAGATTCAAGGACTGTGAGAAGCAGTTACAAGAATCCAAAGTTTTGGCGAAAGAGGCCGGAGATGATGAAGATATG
GCTGAAATGATAGGATCTGAAATCAATTCCCTCTCTAAAGAAATTGAGGAGCTTGAAAAACAACTTAAGATGCTACTTCTTCCCAC
CAACCCTCTTGATGCCAGAAACATATTGCTCGAAGTCAGAGCAGGAACTGGTGGAGATGAAGCTGCTATTTGGACTGGTGACCTTG
TGCGGATGTATCAGAGGTACAGCGAGCGCAGCTCTTGGAAGTTTTCTCTGGTTTCATGCTCTGAGGCTGAACATGGAGGTTACAAG
ACGTGTGTGATGGAGATAAAAGGAAACCGTGTCTATAGCAAGCTCAAATACGAATCTGGTGTTCATAGAGTCCAGCGTGTCCCTCA
AACAGAAACGCAGGGCCGTGTTCACACTTCTACAGCAACTGTAGCCATCATGCCAGAGGCTGATGAAGTGGAAGTTGTGATTGACC
CCAAGGACATTGAACTTACAACTGCGAGATCTGGTGGCGCTGGAGGGCAAAATGTGAACAAGGTGGAGACGGCTATAGACCTAGTC
CATAAACCATCAGGGATACGCATTTTCTGTACTGAAGAAAGGACTCAGCTACGAAACAAGGCTCGTGCTTTCCAGCTTCTGCGAGC
AAAACTGTATGAAATCAAATTAAGGGAACAACAAGAGAAGATAAGGGATCAAAGAAAATCTCAGGTAGGGACTGGAGCTCGTTCAG
AAAAGATAAGAACATATAACTATAAGGATAGTAGAGTGACTGATCATAGGCTAAAGATGAACTTGCGCTTCCATCATTTCTTGAAG
GTGGCTTAGAGGATGCAGTGCAGGCTTGTGCTGCTTTGGAGCAAAAGGAACTCATGGAAGAACTGTCTGAGTCTGTAGCTGCTTCT
TGATAAAGCCTCTCATTACTATACTCAACAGAGATCATAACTATAAAATCTCTATTTGTTTATGAAAGTCTTTGAACAGATATCAT
ATTATTTATAAAGTCTCCCTTTTTATTGATGC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002878486 hypothetical protein ARALYDRAFT_907869 [Arabidopsis lyrata subsp. lyrata] | 1733 | 5e-191 |
| NP_191850 Peptide chain release factor 1 [Arabidopsis thaliana] | 1732 | 6e-191 |
| XP_002269884 PREDICTED: hypothetical protein [Vitis vinifera] | 1480 | 1e-161 |
| XP_002321029 predicted protein [Populus trichocarpa] | 1472 | 8e-161 |
| XP_002520666 peptide chain release factor, putative [Ricinus communis] | 1454 | 1e-158 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8DMG9 Peptide chain release factor 1 | 1140 | 1e-123 |
| Q110D7 Peptide chain release factor 1 | 1130 | 2e-122 |
| B7KI17 Peptide chain release factor 1 | 1129 | 2e-122 |
| Q8YPK9 Peptide chain release factor 1 | 1128 | 3e-122 |
| Q3MF91 Peptide chain release factor 1 | 1126 | 5e-122 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8RX79 AT3g62910/T20O10_10 | 1732 | 4e-191 |
| B9I9V3 Predicted protein | 1472 | 6e-161 |
| B9S3U7 Peptide chain release factor, putative | 1454 | 7e-159 |
| B8BLN3 Putative uncharacterized protein | 1416 | 2e-154 |
| Q2R068 Os11g0657100 protein | 1416 | 2e-154 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G62910.1 APG3 (ALBINO AND PALE GREEN); translation release factor/ translation release factor, codon specific | 1732 | 2e-193 |
| AT2G47020.1 peptide chain release factor, putative | 650 | 6e-068 |
| AT2G47020.2 peptide chain release factor, putative | 516 | 2e-052 |
| AT5G36170.1 HCF109 (HIGH CHLOROPHYLL FLUORESCENT 109); translation release factor/ translation release factor, codon specific | 399 | 8e-039 |
| AT5G36170.2 HCF109 (HIGH CHLOROPHYLL FLUORESCENT 109); translation release factor/ translation release factor, codon specific | 399 | 8e-039 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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