RadishBase

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Information for unigene UN11141

FASTA Sequence

Unigene ID: UN11141	Length: 1236	SSR
GGAGAAACAAGAAAAACAAAACACGAAGTTTACGAGTTTCGTTTGAGAGCTCAAAGGTTCCAGATTTCAAAAGAGCTTCCTTTTTA TTTCTCCAGAATCATTTTCTAGATCAATAGCGGTTTCTGTCATTGGGTGAAAGATGTCGGATCATCTGAGTTTATGTACGGATCGT CTCATAACGGGTGAGAGCTTGGAGTCAGAGAAGGATTGTGGAGAGAGTTCTTGTCCTCAAGGCAGAGATGTGGCTTCTTCTTCTTC TTCGTCTGCGTCTGTCGATGAAGCTGAAGATGCCAGGAAGTACTATGCTGTTGTCGCTACAGAAGAGGAACCGCTTCTCCAGTCTG TTGAGTGCCGTATTTGCCAGGAGGAAGATATCACTAACAACTTGGAGGCTCCTTGTGCTTGCAATGGCAGTTTGAAGTATGCGCAC CGCAAGTGTGTTCAGCGTTGGTGTAATGAGAAAGGTGACATTATCTGCGAAATATGCCACCAGCCTTATCAGTCTGGATATACAGC ACCTCCACCTCCTCCTCCTGATGAAACTATAATTCACATTGGTGAGGATTGGGAGACTGGAGTTCACTTGGACTTGAGCGACCCGC GCATTCTAGCAATGGCTGCAGCAGAACGCCATTTCTTGGAAGCTGACTATGACGAGTACACCGAGTCTAACTCAAGCGGTGCTGCC TTCTGTCGCTCTGCTGCTCTCATCCTGATGGCACTTTTACTGTTACGAGATGCACTAAACCTCACGACTAACCCGGATGACGAGGA CGATCCCACTGCCTTCTTCTCTCTTTTTCTTCTTCGTGCTGCTGGTTTTCTCCTGCCATGTTACATCATGGCATGGGCCATTGGAA TTCTCCAGCGCCGGAGGCAAAGACAGGAGGCTGCTGCTCTAGCTGCCGCGGAAGTTGCGTTCATGATACACGGTGGTGTGCCTCAA CGCAGGGGACTTCACTTTGCTTTATCACCAGAGCAGCCGCCAGTGTCCAACCCAACACCGGTCTGATCCTTCTCCCAGCAATGATT CTCCGGTAAGACTGTTAAGACAACCCTGAACTTTGTTGTAAGAACTTTCCACCTACTTATGCTTCTTCTTCACATGTTTTATCATT TTGCTCGTATGTTTATGTTCTCTGAATCTGTTAAATGTTACTTCTCTACTTTTAAATGTTGTCAAAGCTCTCGGGGCATTATGTAC AGTTTTATTGTTATTATGGTTTTCTTGCTGCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
ADA67984 RING-type E3 ubiquitin ligase [Brassica napus]	1369	6e-149
XP_002875846 zinc finger family protein [Arabidopsis lyrata subsp. lyrata]	1284	4e-139
NP_190339 RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana]	1280	1e-138
NP_850668 RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana]	1116	1e-119
XP_002864796 hypothetical protein ARALYDRAFT_496422 [Arabidopsis lyrata subsp. lyrata]	1037	2e-110

Swiss-Prot top hits (Blast detail)	Score	e value
Q86YJ5 E3 ubiquitin-protein ligase MARCH9	137	2e-007
Q3TZ87 E3 ubiquitin-protein ligase MARCH9	137	2e-007
Q86UD3 E3 ubiquitin-protein ligase MARCH3	134	4e-007
Q8BRX9 E3 ubiquitin-protein ligase MARCH3	134	4e-007
Q5XIE5 E3 ubiquitin-protein ligase MARCH3	134	4e-007

TrEMBL top hits (Blast detail)	Score	e value
D2KC47 RING-type E3 ubiquitin ligase	1369	4e-149
Q9SN83 Putative uncharacterized protein At3g47550	1280	9e-139
A9CEI2 Uncharacterized protein At3g47550.2	1116	9e-120
Q9FJJ6 AT5g62460/K19B1_7	1024	4e-109
Q3E6V0 At3g47550	962	7e-102

Arabidopsis top hits (Blast detail)	Score	e value
AT3G47550.3 zinc finger (C3HC4-type RING finger) family protein	1281	4e-141
AT3G47550.6 zinc finger (C3HC4-type RING finger) family protein	1281	4e-141
AT3G47550.2 zinc finger (C3HC4-type RING finger) family protein	1116	5e-122
AT5G62460.1 zinc finger (C3HC4-type RING finger) family protein	1024	2e-111
AT3G47550.1 zinc finger (C3HC4-type RING finger) family protein	962	4e-104

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


7	3			100%

Unigene Members	Member information