 |
Information for unigene UN11187
| FASTA Sequence |
| Unigene ID: UN11187 | Length: 1358 |
| SNP | GGGCAATTTTCTCACCAAAAGACCTCCTCTCTTTTTTTTTTTTATTATAACCAAACCTCTCTTCTTTTATGTCAAAAGATTATGTG
TAATTAATAAACAAAAAATATTTATCTCTTTCTTAATCCCAGGAAGAATATAGAAACAATGTCTAAATTATCGTTTAATAATCTCA
TCTTTTTTATCATCATTTTCTTCGTCTTCTTGTGTTTGTGTTTGAGATCATCAGCGTTCACGAATCTCAATACCTTAAGCTTCGAA
GAATCACTTTCTCCTTTATTCGGTGACGCTAATCTCGTCCGGTCTCCTGATGATCTCTCCGTTCGCCTCCTCCTCGATCGATACAC
TGGTTCTGGTTTCATATCATCGAACATGTATCAACATGGATTTTACAGCTCTATGATCAAGCTTCCCGCCGATTATACTGCCGGCG
TCGTCGTCGCCTTTTATACATCAAACGGAGACGTGTTCCAGAAAACACATGACGAGTTAGACATAGAGTTTTTAGGGAACATAAAA
GGAAAACCATGGAGGTTTCAGACAAATCTGTACGGTAATGGAAGCACGCCTAGAGGTCGTGAAGAAAGATACCGTCTCTGGTTCGA
TCCTTCTAAAGAGTTTCATCGTTACAGCATCCTCTGGACTCCTCACAAGATCATATTTTGGGTAGATGATGTGCCGATAAGAGAAG
TAATAAGAAGTGAAGCTATGGGAGCCGATTATCCAGCGAAGCCAATGGCTCTTTACGCCACCATCTGGGATGCCTCCGATTGGGCA
ACTTCTGGCGGAAAATACAAAGCTAATTATAAATTTGCTCCTTTTGTCGCAGAATTCAAATCTTTCTCTCTTGATGGTTGCTCTGT
TGATCCCATCCAAGAAGTTCCTGTTGATTGCTCTGACTCCGTCGAGTTCCTTGAGTCGCAAGATTACTCCTCTATCAATTCACATC
AACGTGCCGCCATGAGAAGATTCCGACAACGTTTTATGTATTATTCTTATTGCTATGATACAATTAGGTATCCGAAGCCACCACCA
GAGTGTGTGATTGTTCCGGCAGAGAAAGATAGGTTTAGGGATACAGGGAGGTTGAAATTTGGTGGTACAGAAGCTCGCGAACGGCG
GAGGAATCGCGGACAACAAAGGCCAGAGATTGAAAGTGATCCTGATGAGAGAAAGCTTTTATAATAAGATTTATGTTGTTGTTTTT
ACTTAAAATTCATTTGTGAGTAAAGATGAAAAAAATAAAAGAGTGAAAATATGAAAGAAGGAAAAAGAAAATATGGCAGAGTTAGA
TGTATAATGTAAATTATAAAACATATCAAAATGTAATATCTAAGATTAAAATTGGTTTTCTTACAAAT
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_174496 xyloglucan:xyloglucosyl transferase [Arabidopsis thaliana] | 1670 | 9e-184 |
| AAB18365 xyloglucan endotransglycosylase-related protein [Arabidopsis thaliana] | 1670 | 9e-184 |
| AAM67311 endoxyloglucan transferase, putative [Arabidopsis thaliana] | 1664 | 4e-183 |
| XP_002890971 hypothetical protein ARALYDRAFT_473398 [Arabidopsis lyrata subsp. lyrata] | 1657 | 3e-182 |
| XP_002326748 predicted protein [Populus trichocarpa] | 1273 | 9e-138 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q38908 Probable xyloglucan endotransglucosylase/hydrolase protein 30 | 1670 | 4e-185 |
| Q8L7H3 Probable xyloglucan endotransglucosylase/hydrolase protein 29 | 942 | 1e-100 |
| Q38909 Probable xyloglucan endotransglucosylase/hydrolase protein 28 | 908 | 8e-097 |
| Q8LDS2 Probable xyloglucan endotransglucosylase/hydrolase protein 27 | 900 | 7e-096 |
| Q8LC45 Probable xyloglucan endotransglucosylase/hydrolase protein 33 | 630 | 1e-064 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9MU78 Predicted protein (Fragment) | 1273 | 6e-138 |
| A2TEJ0 Xyloglucan endotransglycosylase/hydrolase XTH-3 | 1248 | 5e-135 |
| B9RZ21 Xyloglucan endotransglucosylase/hydrolase protein 2, putative | 1245 | 1e-134 |
| C6THS0 Putative uncharacterized protein | 1167 | 1e-125 |
| C0IRH3 Xyloglucan endotransglucosylase/hydrolase 14 | 1135 | 6e-122 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G32170.1 XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4); hydrolase, acting on glycosyl bonds / hydrolase, hydrolyzing O-glycosyl compounds / xyloglucan:xyloglucosyl transferase | 1671 | 2e-186 |
| AT4G18990.1 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative | 942 | 8e-102 |
| AT1G14720.1 XTR2 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE RELATED 2); hydrolase, acting on glycosyl bonds / xyloglucan:xyloglucosyl transferase | 908 | 7e-098 |
| AT2G01850.1 EXGT-A3; hydrolase, acting on glycosyl bonds / xyloglucan:xyloglucosyl transferase | 900 | 6e-097 |
| AT1G10550.1 XTH33; hydrolase, acting on glycosyl bonds / hydrolase, hydrolyzing O-glycosyl compounds / xyloglucan:xyloglucosyl transferase | 630 | 1e-065 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
