 |
Information for unigene UN11196
| FASTA Sequence |
| Unigene ID: UN11196 | Length: 1196 |
SSR | | GACCCAAATAGATTCTCAAATCATTAAACATTTACCACAATTGTTTCAAAAGAACCCATGAAAACTCCAAAGAAACATCAAAGGGA
GGTACTGAGTGTGAAAAAGTATCATTAGATAGTGCAACAATCTTACATAAGCTCCGAACACCTTTCTCATTCAGATACTTCTCACT
TTAAAAAGCCGAAAGACCCATCATAAAAAAAAAATCTCACACAAGGTCTTCTTTTAAATAAGATCAGCTACATTCATTGGCATCTC
GTCAATCTGGGTACTGTAGTACTGCTCAATGTCTCGGAGGATCTTTATGTCGTCGCTTTTAACAAAGTTGATCGCAACTCCCTTAC
GCCCAAAACGACCAGATCGTCCAATACGGTGGATGTAGAGCTCACGGTTGTTGGGGAGATCATAATTTATGACAAGAGAAACTTGC
TGCACACCAATACCACGTGCCCATACATCTGTTGTGATCAAAACACGACTGTCGCCTGACCGAAACTGATTCATGATCTCGTCTCT
TTCCTTCTGTGGCATGTCACCGTGCATTGATGAGACTGTGAAGTTGTTAGTCCTCATTTTCTCACTTAGCCAATCCACCTTTCTTT
TTGTGTTGCAGAAGATAACAGCTTGAGTGATAGTAAGTGTGTCATAAAGATCACAGAGCGTATCAAATTTCCATTCCTCCTTCTCC
ACAGCAACGAAAAATTGTTTAATACCCTAATGATCGATAACCAGAATTTGAACTCGGGGAGACGGCGAAAGAACGGTCGATACTCA
TCGGATCTACGAGTAGGAAGAGTCCCGCCGCCGAGCGAGGCCTCGGGATCTTCCTGAGGGGAGAGGAAGGCGATGATGAGGTTGAG
AAGGTAGATTCCGATGGCGTAGGTGATGATGTAGAAGCCTTCCACCAAGTAGACGCGAACGAAGTAGATCAGCACGACGACGAGGC
AACCGATCCATCGATAGAGAACGTGAGGGACGGTCTTGTCGAGGAGATGCTGCTGCCGCTGCTCCACGGCGTGGATCAGCCGTGCG
GCGGCGTCGGCTGGGGACGATGCGTTGCTCGATTGGAGATCATCGGTGGCTGCTGGTGGTGGTGGTGGTGCTGATGCAGAGGCACC
AACCGTGGGTTCGGATTCCATTGGAAGCACTCTCTCTATTTCTCAACTTCTCTCTCCTCTCACTGTTCTCTGCCTTCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002883201 hypothetical protein ARALYDRAFT_479492 [Arabidopsis lyrata subsp. lyrata] | 822 | 2e-085 |
| CAA09195 RNA helicase [Arabidopsis thaliana] | 812 | 2e-084 |
| NP_188610 DEAD-box ATP-dependent RNA helicase 2 [Arabidopsis thaliana] | 812 | 2e-084 |
| AAK91384 AT3g19760/MMB12_21 [Arabidopsis thaliana] | 812 | 2e-084 |
| XP_975511 PREDICTED: similar to eIF4AIII CG7483-PA [Tribolium castaneum] | 804 | 2e-083 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q94A52 DEAD-box ATP-dependent RNA helicase 2 | 812 | 1e-085 |
| P41380 Eukaryotic initiation factor 4A-3 | 792 | 2e-083 |
| Q5VNM3 DEAD-box ATP-dependent RNA helicase 2 | 787 | 8e-083 |
| Q10I26 DEAD-box ATP-dependent RNA helicase 34 | 787 | 8e-083 |
| Q7ZVA6 Eukaryotic initiation factor 4A-III | 772 | 4e-081 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B0XJH6 DEAD box ATP-dependent RNA helicase | 801 | 3e-083 |
| Q16GE2 DEAD box ATP-dependent RNA helicase | 801 | 3e-083 |
| B3M0D8 GF18341 | 798 | 6e-083 |
| B3NZU1 GG24917 | 798 | 6e-083 |
| B4G3R2 GL23429 | 798 | 6e-083 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G19760.1 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative | 813 | 7e-087 |
| AT1G51380.1 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative | 632 | 6e-066 |
| AT3G13920.1 EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1); ATP-dependent helicase/ translation initiation factor | 595 | 1e-061 |
| AT3G13920.3 EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1); ATP-dependent helicase/ translation initiation factor | 595 | 1e-061 |
| AT1G54270.1 EIF4A-2; ATP-dependent helicase/ translation initiation factor | 591 | 4e-061 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
