 |
Information for unigene UN11312
| FASTA Sequence |
| Unigene ID: UN11312 | Length: 1368 |
SSR | | GCGACAAGGGATTTCACTTTCAAAACACACAGATAAAGGAGATCTTTAACAAAATATATTACAAGAATCAAAGCAATAACACACTT
TTAACGCACTCTGACACCCTCGAACCAAACCAAACTACTCCATATACTCCAAAACAAGAGACCCCATTAAGATCTCCAGATTGATG
GTGAAAGCACTTCTGCATGGTTTAGTGAGTTCTTGAAAATCATATCGCCAGCACTATGATAACAATCAGGAGTACGATACCAAAAA
TCACCATGAGCAAGCACATCTGCAAGATAGAAAAAAAAGAACAACAGCAAGAATCATTTTATAGCTTGCTCTGATCATCATCCTAA
ATCCTCAAAAACGAATTAACAGAATGATCAAAAGTTTTAATATCGTTTTTACCAGAGTAGAACTCGATCTTTGTGTCTTCGAAGCT
TTTGCGAGATGAGATCTTCCTTGTGCCGTTGCAGCGTGGGAGTTATCGATGTGAGTGCTAAATCATCGATCATGGTGCCTTGATCA
TGTACCAGAACAGCCAAGTCTTTGAAGATCTCGTGCACCTCGCCAATTTGCTGCTGGATCTCTTGTATCCCTTGCTCTCTTTCCTC
GATTATAGCTTCATTAAATACAATCTCATTGTCCAACAGTACAAGTTCTTGTCTTTTGGATTCCACAAGAAGCGAACGCTGCTCTG
GATGCTTATCTCCACTCACATCTATCTCACTGGATGTATAGCTAGATGGAGGAGAAGGATTGGTGAAAAGAGGAGCATAGACAGTT
TCTCTTTCAGCAGCGAGACGCTGAGCTTTTTGAAACTCTTTCAATACAGATTGAAAGTACTTCGCAAGCTTAGCATCCACAATCTT
CTTCCTTTGATCGACACCTCTTTGATGATCAGTTTCGCTAGCTTCTCTAAGTTTAACTGACGTGTCTTTCACCAACTCTCCGATAT
GTAGTCTTGTCTTATGCAGCTTATCTCGGAGCTCCGGGGTGTCTTTGGGAGTACCGAGAGTGTTGACCAGACGGTGGAAGCTAGAG
ACGGCTGTGTTGATCTGGAATACACCGGAAGCCACGGCTTGCGTCGTGTCTTGTCTCCCTCCTCCTCCGTTGATGTAACTACTGGA
AGAAGAAGCTAACGGTCTTCCTCCTCTTCCTGCCTCTAAATCCTGAAAACTCATTTTCCCTTTCTTACTCGAGAAACCTCACTGCG
AAAAAAGATTCGATCTTGACGGTAACGGAGATCGAGGGAGGAGCGAACGTGACGGTGAATTTTCGATTCGGCGGCGGAATTCTCTC
TCTCTCCGACAGGATCAGATTGAGAAAAAACGTGAATCCCGGGAAGAGAGAGAAGGTTGAGAAAACGTGAAGTGTCCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| ABD65159 syntaxin, putative [Brassica oleracea] | 1040 | 1e-110 |
| NP_567537 syntaxin-23 [Arabidopsis thaliana] | 979 | 1e-103 |
| NP_001078403 syntaxin-23 [Arabidopsis thaliana] | 979 | 1e-103 |
| ABD65611 syntaxin, putative [Brassica oleracea] | 952 | 2e-100 |
| D71447 probable syntaxin - Arabidopsis thaliana | 934 | 2e-098 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q2A976 Syntaxin, putative | 1040 | 7e-111 |
| A8MS65 AT4G17730 protein | 979 | 8e-104 |
| Q25BM0 Syntaxin, putative | 952 | 1e-100 |
| B9MU58 Predicted protein | 837 | 2e-087 |
| B9GZI3 Predicted protein (Fragment) | 836 | 3e-087 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G17730.1 SYP23 (SYNTAXIN OF PLANTS 23); SNAP receptor | 979 | 4e-106 |
| AT4G17730.2 SYP23 (SYNTAXIN OF PLANTS 23); SNAP receptor | 979 | 4e-106 |
| AT5G46860.1 VAM3; SNAP receptor | 775 | 2e-082 |
| AT5G16830.1 SYP21 (SYNTAXIN OF PLANTS 21); SNAP receptor | 636 | 3e-066 |
| AT1G32270.1 ATSYP24; SNAP receptor/ protein binding | 460 | 7e-046 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
