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Information for unigene UN11406
| FASTA Sequence |
| Unigene ID: UN11406 | Length: 1091 |
SSR | | TTTTTGTCGAAGATGAAGAGAATATTCGGTGCGAAGAATAACAAAGAGCCTCCACCGTCCATTCAGGATGCTTCTGATCGGGTTTA
CACTGCATCTCTCTCTCTCTCTCTTTTCGATTCGTGTTTGTTTTATTAAAATCGTAAAGCGGAGGAATGTAGAGAGTTAGGGATAT
GTTTCTCGATATTTAGCTGAGGATGAAGTGATGGTAAGCTATACGAAGTAGTTGAATCTTTTAAAAATCCCTGAAATGTATTATCG
TGTTGTCATGTCAGATCAATAAAAGAGGAGAGTCAGTGGAAGATAAGGTGAAGAGGCTTGATGCTGAGCTCTGCAAATACAAAGAC
CAGATCAAAAGGACCAGACCTGGTCCTGCTCAAGAAACTATCAAAGCTCGTGCTATGCGAGTTCTCAAGCAAAAGAAAATGTATGA
AGGACAACGTGACATGCTGTACAATCAGACTTTCAACCTTGATCAAGTTCCTTTCGCTGCTGAAGAGCCTCAAAGACGCTCAACAA
ACTATGACAGCGTTGAAATCTGCCAACAAGGAGTTGAAAGGAATGATGAGAACCGTCAAGATTCAAGATATTGATAATTTGCAAGA
TGAAATGATGGACTTAATGGATGTGAGCTCTGAAATTCAAGATTCATTGGGTAGGAGCTACAATGTTCCTGATGACATTGACGAAG
ATGACCTCATGGGCGAGCTTGATGCTCTTGAAGCTGACATGGGAAACGAGACCGAAGCAGACGGAGTGCCTTCCTATCTCCAAGCC
GATAAGGAACCGGATCTTGATGAGGAACTTGACTTGCCTCCTCCACCAGTTAGGACAACAACTGGACCTCAACCTGAACGAGCTGC
TCAAAAGGCTGAGGATGAATGGGGATTACCCGCGGTACCACGTGCTTCACTCCGGGGTTAAATTCACACTTTTCTGCTTGTGTGCA
TACAAGAATTCATCTCCAGGCGTTTTCATTTGTGAAAGCTACTATTGTTGTTCTTTTTTATAAATCCCTTAACTCATGTGATTTGT
GCATAACAGTCTCATAAACCTTGGATCCGTTTCTCACAACATGCAATTCTAATCAAACT
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| GenBank top hits (Blast detail) | Score | e value |
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| NP_568143 charged multivesicular body protein 5 [Arabidopsis thaliana] | 570 | 2e-056 |
| XP_002873171 SNF7 family protein [Arabidopsis lyrata subsp. lyrata] | 569 | 3e-056 |
| AAM66939 unknown [Arabidopsis thaliana] | 566 | 7e-056 |
| ACU14189 unknown [Glycine max] | 559 | 4e-055 |
| XP_002518614 Charged multivesicular body protein, putative [Ricinus communis] | 547 | 1e-053 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q7T339 Charged multivesicular body protein 5 | 237 | 4e-019 |
| Q9NZZ3 Charged multivesicular body protein 5 | 231 | 2e-018 |
| Q9D7S9 Charged multivesicular body protein 5 | 231 | 2e-018 |
| Q5RBR3 Charged multivesicular body protein 5 | 231 | 2e-018 |
| Q4QQV8 Charged multivesicular body protein 5 | 231 | 2e-018 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9FMC5 Genomic DNA, chromosome 5, P1 clone:MUK11 | 570 | 2e-056 |
| Q8L964 Putative uncharacterized protein | 566 | 5e-056 |
| C6SY66 Putative uncharacterized protein (Fragment) | 559 | 3e-055 |
| B9RXZ5 Charged multivesicular body protein, putative | 547 | 7e-054 |
| B9HVJ9 Predicted protein | 535 | 2e-052 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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