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Information for unigene UN11442

FASTA Sequence
Unigene ID: UN11442Length: 994 SSR 
GAGTTCATGGTGTTCTCTCCCCATCCCAACGCTCCTCCTCCTCCGCCTTCTCCTCCTCCCATGCTTTCCTCTCCATCTCAGAGAGA
TGAGAGTGACACTGTCACAAACCTTCCTCACAATGCTTCTATAGGGGAGGGTTCTCTTCAGTCAAACATGCAGCCACCACCACAAG
CTTCTTCTCATCCCCGCCAGGTTTCTCCTTCAAACAGCAGGTCTCCTAATCAATCTTCCCCAAGTGATCAAGATAGAGCTGGACCA
TCCGAACTCCAATCATTTTCAGAATCTTTGAAGTCTCGTCTAACCTCCGTCTCGACGAGATACAAAGAATCGATAACAAAGAACAC
AAGTAACTGGAAAGATAGGTTTTTTTCTCGCAACACGTCCATGGCAGAACTTGGCTCTGAGGTTAAAAGAGAGGTCAGTGCTGGAA
TCGCTACTGTGTCCCGCATGATGGAACGTCTAGAAACGAGAGAAAACACTAGTAGTAGTAGTAGTAGACCTGGCACTGCATCTGTA
TCATCATCATCAAATGGCTCAGAGAATCAGACTCCTGCTGAAACAAACAATGAGCGTAACAGATCAGAAGCAGGTGATGAACATTC
TTCGAATGAAAGAGGTGTGAAAGGAACATGTGCGGCTGGTTCTAGTTCTAGCTAATAAAAACAAGTTCCAGCATCTTGTTGGCTAA
GATATGGGAAGATGTTTTCTGTTGTGAAATTCTGCTATATATCTATAATATAATACCGAGTCGGAAGTTCAAAAAGTGTTGGAGCA
ACATAGGAAGAGTTTCTGATTCTTGAAGAAAATAATAAGAAAGGTTATATGACCAAAAGGAGGCTTGCTTCAGAGATGATACATAC
GCCTCCTTATGTGTTGTGCTATTTATGTCAAAACAAAAACTAAAATGAAAAAGAGTAAAGACTGTTGTTGTGCGTTGGTCAGTGTG
TTGTAAATTGACAGTTGTCGTTCACATTACTGTTCTCGACCAGTTCTA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002871983 hypothetical protein ARALYDRAFT_489047 [Arabidopsis lyrata subsp. lyrata]6688e-068
BAC42950 putative RING-H2 finger protein RHF2a [Arabidopsis thaliana]6615e-067
NP_568410 E3 ubiquitin-protein ligase RHF2A [Arabidopsis thaliana]6615e-067
NP_851051 E3 ubiquitin-protein ligase RHF2A [Arabidopsis thaliana]6615e-067
BAH19547 AT5G22000 [Arabidopsis thaliana]6607e-067

Swiss-Prot top hits (Blast detail)Scoree value
Q9ZT42 E3 ubiquitin-protein ligase RHF2A6612e-068
Q4TU14 E3 ubiquitin-protein ligase RHF1A1999e-015
Q75JC9 Uncharacterized protein DDB_G02716701496e-009

TrEMBL top hits (Blast detail)Scoree value
Q2HT04 Zinc finger, RING-type4267e-040
C6TB16 Putative uncharacterized protein4052e-037
B9GEQ0 Predicted protein3845e-035
B9H9M7 Predicted protein3504e-031
B4FAG8 Putative uncharacterized protein3452e-030

Arabidopsis top hits (Blast detail)Scoree value
AT5G22000.2 RHF2A (RING-H2 GROUP F2A); protein binding / zinc ion binding7859e-084
AT5G22000.1 RHF2A (RING-H2 GROUP F2A); protein binding / zinc ion binding7859e-084
AT5G22000.3 RHF2A (RING-H2 GROUP F2A); protein binding / zinc ion binding7859e-084
AT4G14220.1 RHF1A (RING-H2 GROUP F1A); protein binding / ubiquitin-protein ligase/ zinc ion binding1998e-016

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
71  50%
 
81  50%

Unigene MembersMember information