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Information for unigene UN11443

FASTA Sequence
Unigene ID: UN11443Length: 1353 SSR 
GGGAAACTTTCTTCCTCCTCTCTCTCTTCTCTCTCTCTCTCTCTCCTCTATGGCTTTCAACATCTCACGTCTCGACGCTCAATCCG
CCGCTGAGAAAGCAGTATCGGTGATCGGATCAGGCTACGATCTCTGCTCCGACGTCCGTCTCTCAGCTTGTAAACCCACACCCGAC
GGGTCAAGACTCGTCGAAATCGACCCGAACAGGAACAGAGACCTCGTTTTCCCGGGTGGGGTCGTCGTCAGTAACGTCTCGAGCTC
GATCAAGTGCGATAAAGGCGAACGTACTCGTTTCCGCTCCGACATACTCTCTTTTAACCAGATGTCGGAGAAGTTCAATCAGAACA
TGTCTCTTTCGGGCAAGATCCCGTCTGGGATGTTCAACACGATGTTTGAGTTGAAAGAAGGTTGGCAGAAAGATGCTAGCTCGGTG
AAGACGCTTTCTTATGATGGTTGGTTTATTAGTTTGTACAGTATAGAGCTTGATAGGTCGCAGGTGACTCTACGTGATGAAGTGAA
GCGTGAAGTTCCTTCTTCTTGGGACTCTGTTGCGCTTGCCGGGTTTATTGAGAAGTATGGTACTCATATTGTTGTTGGTGTGACGA
TGGGAGGTAAAGATGTGGTTCATATGAAGCAGCTGCGTAATTCGAATCATGAGCCTGATGAGGTTCAGAAGCTGTTGAAGCAGTTG
GGTGATAAGAGATTTGCTGTTGATCCAGTTGAAAGTGTCTCTCCTAATGCTGCTTACACCAGAACCCCAAAGGAGGAGAATCCTAT
CCAGTGGGGGTTTCCTGGACAGTTTGGTTCCTCTGTTAGTCGTCCTGTTATAACACACTCCAAGAACGAGGATTTAGTGAGCATTT
TGTATAAGAAGAGGAGGTGTTGATATGGGACAAAGTCATGATCGTTGGGCTTTCACGATATCACAATCACCCAACGCTATATCTAT
GTGCTTTGTTCCCATTACTTCACTCTTGAGTGGTCTTCCAGGAACAGGGTTTCTTAGTCACGCAGTGAACTTATACCTTAGATATA
AGCCACCGATAGAAGAGTTGCAACAGTTTCTCGAGTTTCAACTTCCACGCCAATGGGCTCCGGTGTACGGAGACCTCCCTCTTGGA
CTACGCCGCAGAAAACAAAGCTCTCCGTCCTTACAGTTCTCTTTGATGGGTCCAAAACTTTATGTCAACACATCAACGGTTGATTC
AGGTGAGAGACCAGTAACAGGACTACGTTTGTTCCTAGAGGGGAAGAAAGGAGATCATCTAGCAATCCACTTGCAGCACCTCTCTA
CGTGTCCTCCAAGTCTCCACCTCTCGCAAGACGACACCTACGAACCCGTCGATGAACCATCTG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
BAJ34587 unnamed protein product [Thellungiella halophila]12666e-137
XP_002890774 hypothetical protein ARALYDRAFT_473053 [Arabidopsis lyrata subsp. lyrata]10991e-117
NP_564307 MAC/Perforin domain-containing protein [Arabidopsis thaliana]10911e-116
XP_002305779 predicted protein [Populus trichocarpa]8841e-092
CAN74094 hypothetical protein VITISV_023707 [Vitis vinifera]8742e-091

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q9SGN6 F3M18.1810918e-117
B9H2R6 Predicted protein8848e-093
A5B2K6 Putative uncharacterized protein8741e-091
B9N3I8 Predicted protein (Fragment)8614e-090
B9RBA7 Putative uncharacterized protein8453e-088

Arabidopsis top hits (Blast detail)Scoree value
AT1G28380.1 NSL1 (necrotic spotted lesions 1)10914e-119
AT4G24290.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Membrane attack complex component/perforin/complement C9 (InterPro:IPR001862); BEST Arabidopsis thaliana protein match is: NSL1 (necrotic spotted lesions 1) (TAIR:AT1G28380.1); Has 124 Blast hits to 124 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 41; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).6443e-067
AT4G24290.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Membrane attack complex component/perforin/complement C9 (InterPro:IPR001862); BEST Arabidopsis thaliana protein match is: NSL1 (necrotic spotted lesions 1) (TAIR:AT1G28380.1); Has 150 Blast hits to 149 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 41; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).6443e-067
AT1G14780.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Membrane attack complex component/perforin/complement C9 (InterPro:IPR001862); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24290.2); Has 119 Blast hits to 118 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).4875e-049
AT1G29690.1 CAD1 (constitutively activated cell death 1)4526e-045

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
121  25%
 
211  25%
 
201  25%
 
81  25%

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