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Information for unigene UN11470

FASTA Sequence
Unigene ID: UN11470Length: 1539 SSR 
GGGGAAGAAAATGGATGATGAATATCAGAACTTTTTGGCTGAGTTAGGAGGAACTCTCCCTGAATCTTCTCTCAAACAGAGTACTA
ATACCTTGGCTCTTGGACCGGGAAGTTCGGGGGGAAGTAATCCTCCATGGGCTAGCAATGGGGGCAGTGGGGCAAGTGCGCATCCT
GGCTTAGGGTCAAATCCAGCCAAACCCTCCAAAGAATATGATGAAAAAAATCTCTACATTGGGTTCTTACCTACGATGCTTGAGGA
CGATGGTTTGATTAATCTTTTTTCACCCTTTGGCGAAATTGTGATGGCAAAGGTAATAAAGGACCATATTTCTGGTCTGAGCAGAG
GCTATGGTTTTGTGAAGTACGCAGATGTCCAGATGGCCAATTCGGCGATACAGGCAATGAATGGTTATCGGTTAGAAGGTAAAACA
CTTGCTGTCAGGATTGCTGGTAAACCGGCACCGCCTCCTGGGCCCCCGGCACCTCCCCCACCTACTCAATCTTATCCTCCTCCACC
ATCACAACCATATGGCGCTGGTGGGCAACTGCCAAATCCTTCATATTCACCGGCTCCAGTTCCTTGGGGTCCTCCTGTTCCTTCCT
ATTCACAATATGCTCCTCCGCCTCCTCCTGGTTCTTACCATCCCGTCCCTGGTCAACACATGTCTCCTTATGGAATGCACTACCCA
CCACCACCACCACCTCCTCATGTGACACAAGCTCCTCCACCTGGCACTACTACTAGTGAAAGCCAGCAAAGCTTCCCACCAGGAGT
AGTACAAGCAGACAGTGGTACTCCTCCTCCATCTGTGCCACCAAATGTCTATGGTGGTTCGCTTTCAGGTGTGCCTGGACAGCCTC
CGTATATGAGTTATCCATCTTATTACGCTGCTGTTCCACCTCCACCTCCACCTCCAGTGCCGACCTCGTCTGCTGATCATTCCCAA
AGCATGGGTAACATGCCGTGGGCGAACAATCCTCCTATGCCGTCATCTGATCACTCGCAAGGTGTAGGTAATGCACCTTGGGCACC
TAATCCTCTTCTGCCACCTTCTGTTGGATATTCGCAGAGCATGGGGAACGCACCCTGGGCTCCCAAGCCTCCAGTTCAGCCACCTG
CAGAGAATCCATCCGCTGTTGGAGATTTTGAGTATGAGAAGTTCATGGCTGAGATGAAGTAGCATGTGGTGTTTTAAGGATAAACT
CCTTAGTGGAGAGGTGTGATGTTTCTTGGAGCCTCTTGTACCGTGATTATCTTACATCTTTCTTGTTGGAAGTTTGGGACTCACAT
TTTAACCCCTTGCTATGCTGTTGTGAAATATGCAGAGATTCAGGCTGGAAGCTCCCAGTTCATACTACTGTTTCCTTCATAAATGC
CATAAGATATTTTATTTATGTTACTGATAATAATTTATTTTCTGTACCTTTTCAGTTTGGGATTTGAAACTTTTGGTGGTATTGGT
GTCGACATATCATATCTAGTTCCTGATACATCTTTGGATCATTTAAATTTTTTTCTTTTGTGATAGAAAGCTTTTTT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002865852 hypothetical protein ARALYDRAFT_495202 [Arabidopsis lyrata subsp. lyrata]16458e-181
NP_199943 splicing factor 1 [Arabidopsis thaliana]16422e-180
AAK43947 unknown protein [Arabidopsis thaliana]16422e-180
XP_002886939 hypothetical protein ARALYDRAFT_475645 [Arabidopsis lyrata subsp. lyrata]16224e-178
EAZ30506 hypothetical protein OsJ_14553 [Oryza sativa Japonica Group]9593e-101

Swiss-Prot top hits (Blast detail)Scoree value
P13983 Extensin2645e-022
Q9FPQ6 Vegetative cell wall protein gp12502e-020
Q12926 ELAV-like protein 21822e-012
Q60899 ELAV-like protein 21822e-012
Q5R9Z6 ELAV-like protein 21822e-012

TrEMBL top hits (Blast detail)Scoree value
Q94KA0 Putative uncharacterized protein At5g5130016421e-180
Q9LU44 AT5G51300 protein16421e-180
A3AT67 Putative uncharacterized protein9592e-101
A2XSQ6 Putative uncharacterized protein9564e-101
C5WNL2 Putative uncharacterized protein Sb01g0386908176e-085

Arabidopsis top hits (Blast detail)Scoree value
AT5G51300.1 splicing factor-related16435e-183
AT5G51300.2 splicing factor-related16435e-183
AT5G51300.3 splicing factor-related16435e-183
AT4G13340.1 leucine-rich repeat family protein / extensin family protein2887e-026
AT5G47320.1 RPS19 (RIBOSOMAL PROTEIN S19); RNA binding1571e-010

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
111  20%
 
211  20%
 
201  20%
 
81  20%
 
101  20%

Unigene MembersMember information